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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 234 repositories
  • eggd_conductor Public

    DNAnexus app for automated analysis

    eastgenomics/eggd_conductor’s past year of commit activity
    Python 1 MIT 1 20 1 Updated Oct 25, 2024
  • eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    eastgenomics/eggd_generate_variant_workbook’s past year of commit activity
    Python 3 0 14 0 Updated Oct 25, 2024
  • clinvar_submissions Public
    eastgenomics/clinvar_submissions’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 25, 2024
  • eggd_CANRISK_vcf Public
    eastgenomics/eggd_CANRISK_vcf’s past year of commit activity
    Shell 0 MIT 0 0 1 Updated Oct 24, 2024
  • egg4_dias_TWE_config Public

    Config for the Dias TWE assay

    eastgenomics/egg4_dias_TWE_config’s past year of commit activity
    1 0 0 0 Updated Oct 24, 2024
  • eggd_vep_CEN_config Public

    Json configuration file for the implementation of VEP for the CEN assay.

    eastgenomics/eggd_vep_CEN_config’s past year of commit activity
    1 MIT 0 1 0 Updated Oct 24, 2024
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 3 2 Updated Oct 24, 2024
  • eggd_vep_helios_config Public
    eastgenomics/eggd_vep_helios_config’s past year of commit activity
    0 MIT 0 1 0 Updated Oct 24, 2024
  • s3_upload Public

    Uploads Illumina sequencing runs into Amazon S3 storage

    eastgenomics/s3_upload’s past year of commit activity
    Python 0 MIT 0 6 0 Updated Oct 24, 2024
  • eggd_vep_TWE_config Public

    Json configuration file for the implementation of VEP for the TWE assay.

    eastgenomics/eggd_vep_TWE_config’s past year of commit activity
    1 MIT 0 1 0 Updated Oct 24, 2024
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