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Commits on Mar 14, 2016

• impute-info: do calculation with double; only convert to float on insert into VCF

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Commits on Mar 4, 2016

• whitespace [minor]

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• docs: add some clarification for view filters. fix some typos. closes samtools#357

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Commits on Feb 23, 2016

• Merge branch 'dlaehnemann-develop' into develop

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Commits on Feb 19, 2016

• vcfcall: fix typo in error message [minor]

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• vcfannotate: fix typo [minor]

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• plot-vcfstats: update expected headers [minor]

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Commits on Feb 12, 2016

• Merge pull request samtools#381 from samtools/feature/test_plugins

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• test plugins via travis too

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• fill-tags plugin: add NS tag

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Commits on Feb 10, 2016

• remove some chatter from test suite

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• Merge pull request samtools#374 from samtools/feature/no_version

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Commits on Jan 21, 2016

• add --no-version option to suppress appending of version and command line to output headers

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Commits on Jan 15, 2016

• Merge pull request samtools#359 from samtools/feature/naive_concat

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Commits on Jan 11, 2016

• Happy New Year

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Commits on Dec 15, 2015

• update manpage docs after adding --threads options

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Commits on Dec 10, 2015

• add --threads option for output compression threads

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Commits on Dec 7, 2015

• split out test input files for -c and -m calling

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Commits on Nov 20, 2015

• Merge pull request samtools#354 from samtools/feature/filter_pos

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Commits on Nov 19, 2015

• add POS as a filter column

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Commits on Nov 16, 2015

• add *.dSYM to .gitignore

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• update docs from asciidoc

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• Merge branch 'feature/cnv' into develop

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Commits on Nov 13, 2015

• Merge pull request samtools#352 from dlaehnemann/develop

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Commits on Nov 6, 2015

• update man and html doc from the asciidoc

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• add some missing documentation

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• document subset behaviour with regard to sample dependent tags

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• Document requirement of compressed/indexed files when reading multiple VCFs simultaneously

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Commits on Oct 22, 2015

• add test for consensus on empty vcf file

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Commits on Oct 15, 2015

• Merge pull request samtools#337 from adamspargo/issue320

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• genaralise mcall_trim_numberR beyond DPR to any Number=R/Type=Integer tag

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Commits on Oct 12, 2015

• add tests for trimming many alleles and dropping header+format

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Commits on Oct 2, 2015

• rename plugin/info.c -> plugin/impute-info.c

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• Makefile: remove unnecessary "\"

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• color-chrs.pl: add copyright boilerplate

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