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Commits on Mar 15, 2016

• getopt_long() returns int, not char

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Commits on Feb 1, 2016

• Fix merging of Number=G format strings

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Commits on Dec 15, 2015

• Merge version number bump from master

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• Release 1.3: various new options, plugins, and bug fixes

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Commits on Nov 10, 2015

• Fix error message segfault [minor]

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• Dynamically export bcftools symbols to plugins

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Commits on Sep 14, 2015

• Merge norm -m- test (PR samtools#315)

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Commits on Sep 2, 2015

• Fix whitespace [trivial]

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• Avoid using C99 NAN macro

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• Merge new handling of ploidy (PR samtools#313)

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Commits on Aug 7, 2015

• Check that opening chain and output files succeeded

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Commits on Jul 6, 2015

• Fix polysomy dependencies [minor]

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Commits on Mar 20, 2015

• Merge plugin installation (PR samtools#206)

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• Update $BCFTOOLS_PLUGINS handling

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Commits on Mar 16, 2015

• Don't crash in "bcftools plugin --help"

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• Apple's .dSYM debugging byproducts are directories

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• [Makefile] Use user's CPPFLAGS/LDFLAGS/LIBS variables

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Commits on Feb 19, 2015

• Travis builds clone corresponding htslib branch

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Commits on Feb 2, 2015

• Merge version number bump from master

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• Release 1.2: new consensus command and annotate plugins, bug fixes

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• Happy New Year

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Commits on Jan 30, 2015

• Rename to LICENSE

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Commits on Dec 15, 2014

• Use the right type in realloc()

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Commits on Nov 3, 2014

• Use hts_get_format() rather than direct access to htsFile internals

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Commits on Oct 15, 2014

• Print "This is free software [etc]" for both licenses

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Commits on Oct 14, 2014

• Print licensing info in --version and usage

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Commits on Sep 24, 2014

• Fix usage tests and ensure they have a terminal on stdin

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Commits on Sep 23, 2014

• Merge version number bump from master branch

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• Release 1.1: bug fixes, new convert and plugin commands

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• Temporarily remove polysomy for 1.1 release

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Commits on Sep 4, 2014

• Use the typedef, just as code elsewhere does [minor]

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Commits on Aug 19, 2014

• Merge convert, filter, and rename-chrs branches

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• Move test_rename_chrs() output files out of $$opts{tmp}

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• Fix convert.h dependencies

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Commits on Aug 18, 2014

• Redefining a typedef is an error prior to C11

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