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Commits on Jul 7, 2015

• cnv: Prior on CN2; changed the default -P to be more strict (0.5)

  

  pd3

  authored and

  mcshane

  committed
  d3f9fe4

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Commits on Jul 6, 2015

• RoH bugfix: Transition probabilities must scale to 1

  

  pd3

  authored and

  mcshane

  committed
  f506244

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• The HMM structure becomes opaque for future flexibility

  

  pd3

  authored and

  mcshane

  committed
  8fdd498

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Commits on Jan 15, 2015

• cnv improvements:

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  pd3

  committed
  f0922b6

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Commits on Oct 24, 2014

• cnv: Fixed a mem alloc bug when viterbi is combined with fwd/bwd

  pd3

  committed
  3d5d3d9

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Commits on Sep 4, 2014

• Improved polysomy evaluation; changed cnv -i default value

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  pd3

  committed
  7270394

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Commits on Sep 3, 2014

• New "polysomy" command

  pd3

  committed
  40bfca9

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Commits on Sep 2, 2014

• New cnv command for copy number variation

  pd3

  committed
  93f17fe

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Commits on Aug 26, 2014

• Small improvemens and fixes in roh

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  pd3

  committed
  4e4bd11

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Commits on Jun 27, 2014

• RoH: Updated docs, more intuitive variable naming

  pd3

  committed
  e441934

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Commits on Jun 23, 2014

• RoH rewritten for greater flexibility, experimental

  pd3

  committed
  b1b2fb2

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