feat: gh action annotation for ruff

.github/workflows/lint.yml

@@ -14,14 +14,20 @@ jobs:
           python-version-file: pyproject.toml
       - name: Install ruff and requirements
         run: |
-          pip3 install -r <(cat deps/requirements_dev.txt | grep '^ruff==')
-      - name: Run ruff
+          pip3 install -r <(grep '^ruff==' deps/requirements_dev.txt)
+      - name: Run ruff (code annotation)
+        run: |
+          set +e  # Do not exit shell on ruff failure
+
+          ruff check --output-format=github
+          exit 0
+      - name: Run ruff (summary)
         run: |
           set +e  # Do not exit shell on ruff failure
 
           nonzero_exit=0
           files=$(find . -type f -name "*.py" | sort)
-          while read file; do
+          while read -r file; do
             out=$(ruff check --force-exclude "$file" 2> ruff_stderr.txt)
             exit_code=$?
             err=$(<ruff_stderr.txt)
@@ -34,15 +40,11 @@ jobs:
               # Display the raw output in the step
               echo "${out}"
               # Display the Markdown output in the job summary
-              echo "\`\`\`python" >> $GITHUB_STEP_SUMMARY
-              echo "${out}" >> $GITHUB_STEP_SUMMARY
-              echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
+              { echo "\`\`\`python"; echo "${out}"; echo "\`\`\`"; } >> "$GITHUB_STEP_SUMMARY"
             fi
             if [[ -n "$err" ]]; then
               echo "${err}"
-              echo "\`\`\`python" >> $GITHUB_STEP_SUMMARY
-              echo "${err}" >> $GITHUB_STEP_SUMMARY
-              echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
+              { echo "\`\`\`python"; echo "${err}"; echo "\`\`\`"; } >> "$GITHUB_STEP_SUMMARY"
             fi
 
             out=$(ruff check --diff --force-exclude "$file" 2> ruff_stderr.txt)
@@ -52,15 +54,11 @@ jobs:
               # Display the raw output in the step
               echo "${out}"
               # Display the Markdown output in the job summary
-              echo "\`\`\`diff" >> $GITHUB_STEP_SUMMARY
-              echo "${out}" >> $GITHUB_STEP_SUMMARY
-              echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
+              { echo "\`\`\`python"; echo "${out}"; echo "\`\`\`"; } >> "$GITHUB_STEP_SUMMARY"
             fi
             if [[ -n "$err" ]]; then
               echo "${err}"
-              echo "\`\`\`python" >> $GITHUB_STEP_SUMMARY
-              echo "${err}" >> $GITHUB_STEP_SUMMARY
-              echo "\`\`\`" >> $GITHUB_STEP_SUMMARY
+              { echo "\`\`\`python"; echo "${err}"; echo "\`\`\`"; } >> "$GITHUB_STEP_SUMMARY"
             fi
           done <<< "$files"
 

deps/.requirements_dev.in.sha256

@@ -1 +1 @@
-b60225662f46bea871b4eda78e074a85e9b20c40fb6b6eb5688eb98552c7b3cf  requirements_dev.in
+c7bed867f5c2ddbe55f335d9afcf1626fdf8e757d018065d424d8b874d43d2eb  requirements_dev.in

deps/.requirements_docs.in.sha256

@@ -1 +1 @@
-b60225662f46bea871b4eda78e074a85e9b20c40fb6b6eb5688eb98552c7b3cf  requirements_dev.in
+2498fc535b1cab961140005b83cf43affe9b4ec815db4fee94698948f744f4c9  requirements_docs.in

deps/requirements_dev.in

@@ -1,6 +1,6 @@
 -r requirements.in
 -r requirements_docs.in
-ruff==0.2.2
+ruff==0.4.5
 pytest==8.0.1
 pytest-cov==4.1.0
 types-tqdm==4.66.0.20240106

deps/requirements_dev.txt

@@ -1,6 +1,7 @@
 # This file was autogenerated by uv via the following command:
 #    uv pip compile requirements_dev.in -o requirements_dev.txt
 ansi2html==1.9.1
+    # via -r requirements.in
 attrs==23.2.0
     # via
     #   clearml
@@ -11,14 +12,17 @@ babel==2.14.0
 cairocffi==1.6.1
     # via cairosvg
 cairosvg==2.7.1
-    # via mkdocs-material
+    # via
+    #   -r requirements.in
+    #   mkdocs-material
 certifi==2024.2.2
     # via requests
 cffi==1.16.0
     # via cairocffi
 charset-normalizer==3.3.2
     # via requests
 clearml==1.14.4
+    # via -r requirements.in
 click==8.1.7
     # via
     #   mkdocs
@@ -80,14 +84,18 @@ markupsafe==2.1.5
     #   mkdocs
     #   mkdocstrings
 matplotlib==3.8.3
-    # via types-seaborn
+    # via
+    #   -r requirements.in
+    #   types-seaborn
 mdurl==0.1.2
     # via markdown-it-py
 mergedeep==1.3.4
     # via mkdocs
 mike==2.0.0
+    # via -r requirements_docs.in
 mkdocs==1.5.3
     # via
+    #   -r requirements_docs.in
     #   mike
     #   mkdocs-autorefs
     #   mkdocs-coverage
@@ -96,18 +104,30 @@ mkdocs==1.5.3
     #   mkdocs-material
     #   mkdocstrings
 mkdocs-autorefs==0.5.0
-    # via mkdocstrings
+    # via
+    #   -r requirements_docs.in
+    #   mkdocstrings
 mkdocs-coverage==1.0.0
+    # via -r requirements_docs.in
 mkdocs-gen-files==0.5.0
+    # via -r requirements_docs.in
 mkdocs-literate-nav==0.6.1
+    # via -r requirements_docs.in
 mkdocs-material==9.5.3
+    # via -r requirements_docs.in
 mkdocs-material-extensions==1.3.1
-    # via mkdocs-material
+    # via
+    #   -r requirements_docs.in
+    #   mkdocs-material
 mkdocstrings==0.24.0
-    # via mkdocstrings-python
+    # via
+    #   -r requirements_docs.in
+    #   mkdocstrings-python
 mkdocstrings-python==1.8.0
+    # via -r requirements_docs.in
 numpy==1.26.4
     # via
+    #   -r requirements.in
     #   clearml
     #   contourpy
     #   matplotlib
@@ -130,6 +150,7 @@ pathspec==0.12.1
     # via mkdocs
 pillow==9.5.0
     # via
+    #   -r requirements.in
     #   cairosvg
     #   clearml
     #   matplotlib
@@ -160,14 +181,18 @@ pyparsing==3.1.1
     #   matplotlib
     #   mike
 pytest==8.0.1
-    # via pytest-cov
+    # via
+    #   -r requirements_dev.in
+    #   pytest-cov
 pytest-cov==4.1.0
+    # via -r requirements_dev.in
 python-dateutil==2.8.2
     # via
     #   clearml
     #   ghp-import
     #   matplotlib
 python-dotenv==1.0.1
+    # via -r requirements.in
 pyyaml==6.0.1
     # via
     #   clearml
@@ -189,11 +214,13 @@ requests==2.31.0
     #   clearml
     #   mkdocs-material
 rich==13.7.0
+    # via -r requirements.in
 rpds-py==0.18.0
     # via
     #   jsonschema
     #   referencing
-ruff==0.2.2
+ruff==0.4.5
+    # via -r requirements_dev.in
 six==1.16.0
     # via
     #   clearml
@@ -202,17 +229,21 @@ six==1.16.0
     #   pathlib2
     #   python-dateutil
 slack-bolt==1.18.1
+    # via -r requirements.in
 slack-sdk==3.27.0
     # via slack-bolt
 tinycss2==1.2.1
     # via
     #   cairosvg
     #   cssselect2
 tqdm==4.66.2
+    # via -r requirements.in
 types-pytz==2024.1.0.20240203
     # via pandas-stubs
 types-seaborn==0.13.2.20240205
+    # via -r requirements_dev.in
 types-tqdm==4.66.0.20240106
+    # via -r requirements_dev.in
 urllib3==2.2.1
     # via
     #   clearml