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@deargen

deargen

README.md

Python packages

  • rust-graph: Dijkstra algorithm written in rust
  • bio-data-to-db: Uniprot DB parser written in rust, with additional DB helper functions
  • slack-helpers: Send experiment results to slack with ease
  • biotest: Compare PDB files, allowing small precision error

Project management

  • python-project-template-2024: All good practices in python packaging in one repo.
  • workflows: GitHub Actions reusable workflows and composite actions, plus some python project helper tools projector

Binary as a python package

Pure binary releases

Popular repositories Loading

  1. mt-dti mt-dti Public

    An official Molecule Transformer Drug Target Interaction (MT-DTI) model

    Python 34 20

  2. MT-ENet MT-ENet Public

    Repository for "Improving evidential deep learning via multi-task learning," published in AAAI2022

    Python 19 2

  3. cmg cmg Public

    Controlled Molecule Generator for for Optimizing Multiple Chemical Properties

    Python 7 4

  4. DearWXpub DearWXpub Public

    a neural network-based feature selection algorithm for next-generation sequencing data

    R 6 5

  5. react-clustergrammer react-clustergrammer Public

    React component for clustergrammer

    JavaScript 6 6

  6. Pocket2Mol_RL_public Pocket2Mol_RL_public Public

    Public repository of the paper <Fine-tuning Pocket-conditioned 3D Molecule Generation via Reinforcment Learning>

    Python 6 2

Repositories

Showing 10 of 39 repositories
  • python-project-template-2024 Public template
    deargen/python-project-template-2024’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 30, 2025
  • workflows Public

    Reusable GitHub Actions workflows (CI) and a python project management tool `projector`

    deargen/workflows’s past year of commit activity
    Python 1 1 0 0 Updated Apr 29, 2025
  • reduce-binary Public

    Automatically compile and release "reduce".

    deargen/reduce-binary’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Apr 24, 2025
  • py-reduce-binary Public

    Install reduce with pip

    deargen/py-reduce-binary’s past year of commit activity
    Python 0 0 0 0 Updated Apr 24, 2025
  • rust-graph Public

    Graph algorithm implementations in Rust available as a Python package

    deargen/rust-graph’s past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Mar 21, 2025
  • pytest-notebook Public Forked from chrisjsewell/pytest-notebook

    A pytest plugin for regression testing and regenerating Jupyter Notebooks

    deargen/pytest-notebook’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 13 0 0 Updated Jan 31, 2025
  • biotest Public

    Pytest utilities for bioinformatics

    deargen/biotest’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated Dec 20, 2024
  • .github Public
    deargen/.github’s past year of commit activity
    0 0 0 0 Updated Dec 13, 2024
  • py-apbs-binary Public

    Install APBS with pip

    deargen/py-apbs-binary’s past year of commit activity
    Python 1 0 0 0 Updated Dec 12, 2024
  • slack-helpers Public

    Send traceback, matplotlib, pillow, PDB etc. on Slack and preview them with ease.

    deargen/slack-helpers’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 12, 2024
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