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Pull requests: cumc/bioworkflows

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Pull requests list

Added self defined db as an option for annovar
#178 by lamanda0227 was merged Apr 11, 2024 Loading…
2
update vep to handle multiple VCF's
#177 by dianacornejo was merged Feb 13, 2024 Loading…
1
added gnomad custom anno
#176 by dianacornejo was closed Feb 12, 2024 Loading…
1
changes to annovar_rap and vep
#175 by dianacornejo was merged Nov 6, 2023 Loading…
1
Nice updates
#174 by dianacornejo was merged Nov 1, 2023 Loading…
1
forgot gzip in read df
#173 by dianacornejo was closed Oct 31, 2023 Loading…
1
added tested indel cadd annotation
#172 by dianacornejo was merged Oct 31, 2023 Loading…
1
Added CADD and Loftee annotations
#171 by dianacornejo was merged Oct 26, 2023 Loading…
1
Annovar for RAP and VEP updates
#170 by dianacornejo was merged Oct 11, 2023 Loading…
1
added csg2 to the notebook
#168 by dianacornejo was merged Jan 19, 2023 Loading…
1
fixed vcf-qc_3
#167 by dianacornejo was merged Dec 30, 2022 Loading…
1
add plink and vcftools to the submit script
#166 by dianacornejo was merged Dec 28, 2022 Loading…
1
improve submission script description
#165 by dianacornejo was merged Dec 27, 2022 Loading…
1
changes to calling pipeline by Isabelles wishes
#164 by dianacornejo was merged Dec 21, 2022 Loading…
1
Add container to liftover.ipynb
#163 by hsun3163 was merged Oct 19, 2022 Loading…
1
fix error handeling indels in avinput forma
#162 by dianacornejo was merged Jul 13, 2022 Loading…
Fix input error
#161 by changebio was merged Jul 7, 2022 Loading…
7
fixed bugs in the liftover pipeline
#160 by dianacornejo was merged Jul 1, 2022 Loading…
add the option to keep certain samples when making the GRM
#159 by dianacornejo was merged Jul 1, 2022 Loading…
Update the annotation mapping
#158 by UxxUnet was merged Jul 7, 2022 Loading…
2
Fix the unzip folder for .pl and bugs in install_R_packages.R
#157 by UxxUnet was merged Jun 23, 2022 Loading…
fix path in burden test
#156 by dianacornejo was merged May 13, 2022 Loading…
4
update region extraction pipeline
#155 by changebio was merged Apr 29, 2022 Loading…
update GMMAT--add bhat and sbhat
#154 by yuliu426 was merged Mar 31, 2022 Loading…
deal with one input geno
#153 by changebio was merged Apr 20, 2022 Loading…
9
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