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[ENH] drop rsHRF support #906

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Merged
Remi-Gau merged 4 commits into from
Jan 6, 2023
Merged

[ENH] drop rsHRF support #906

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073015c
drop rsHRF support
Remi-Gau Jan 4, 2023
ce646b1
fix utils in test
Remi-Gau Jan 4, 2023
eae5edd
Merge branch 'main' into drop_rsfhrf
Remi-Gau Jan 4, 2023
5a4304a
remove test workflow
Remi-Gau Jan 6, 2023
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74 changes: 0 additions & 74 deletions src/batches/setBatchRsHRF.m
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1 change: 0 additions & 1 deletion src/defaults/checkOptions.m
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Original file line number Diff line number Diff line change
Expand Up @@ -167,7 +167,6 @@
opt = setFields(opt, fieldsToSet);

% Options for toolboxes
opt = setFields(opt, rsHRF_my_defaults());
opt = setFields(opt, MACS_my_defaults());

checkFields(opt);
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43 changes: 0 additions & 43 deletions src/defaults/rsHRF_my_defaults.m
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12 changes: 12 additions & 0 deletions src/messages/bidspmHelp.m
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Original file line number Diff line number Diff line change
Expand Up @@ -132,6 +132,8 @@ function bidspmHelp()
%
% **COPY:**
%
% Copies fmriprep data for smoothing.
%
% .. code-block:: matlab
%
% bidspm(bids_dir, output_dir, 'subject', ...
Expand All @@ -147,6 +149,8 @@ function bidspmHelp()
%
% **CREATE_ROI:**
%
% Creates ROIs from a given atlas.
%
% .. code-block:: matlab
%
% bidspm(bids_dir, output_dir, 'subject', ...
Expand Down Expand Up @@ -189,6 +193,8 @@ function bidspmHelp()
%
% **DEFAULT_MODEL:**
%
% Creates a default BIDS stats model for a given raw BIDS dataset.
%
% .. code-block:: matlab
%
% bidspm(bids_dir, output_dir, 'dataset', ...
Expand All @@ -206,6 +212,12 @@ function bidspmHelp()
%
% **STATS:**
%
% .. note::
%
% - ``'stats'`` runs model specification / estimation, contrast computation, display results
% - ``'contrasts'`` runs contrast computation, display results
% - ``'results'`` displays results
%
% .. code-block:: matlab
%
% bidspm(bids_dir, output_dir, 'subject', ...
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46 changes: 0 additions & 46 deletions src/workflows/bidsRsHrf.m
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22 changes: 0 additions & 22 deletions tests/tests_workflows/test_bidsRsHrf.m
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1 change: 0 additions & 1 deletion tests/utils/defaultOptions.m
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Original file line number Diff line number Diff line change
Expand Up @@ -103,7 +103,6 @@
expectedOptions.taskName = {expectedOptions.taskName};
end

expectedOptions = setFields(expectedOptions, rsHRF_my_defaults());
expectedOptions = setFields(expectedOptions, MACS_my_defaults());

expectedOptions.msg.color = '';
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