[FIX] fix printing of of path

src/IO/overwriteDir.m

@@ -1,4 +1,8 @@
 function overwriteDir(directory, opt)
+  %
+  % USAGE::
+  %
+  %     overwriteDir(directory, opt)
   %
   % (C) Copyright 2021 CPP_SPM developers
 

src/batches/saveMatlabBatch.m

@@ -46,11 +46,14 @@ function saveMatlabBatch(matlabbatch, batchType, opt, subLabel) %#ok<INUSL>
   end
 
   jobsDir = fullfile(opt.dir.jobs, subLabel);
-  [~, ~, ~] = mkdir(jobsDir);
+  spm_mkdir(jobsDir);
 
   batchFileName = returnBatchFileName(batchType, '.mat');
   batchFileName = fullfile(jobsDir, batchFileName);
 
+  msg = sprintf('\nSaving job in:\n\t%s', pathToPrint(opt.dir.jobs));
+  printToScreen(msg, opt);
+
   save(batchFileName, 'matlabbatch', '-v7');
 
   saveSpmScript(batchFileName);

src/batches/stats/setBatchFactorialDesign.m

@@ -137,7 +137,7 @@
     icell(1).scans{end + 1, 1} = file;
 
     printProcessingSubject(iSub, subLabel, opt);
-    msg = sprintf(' %s\n\n', char(file));
+    msg = sprintf(' %s\n\n', pathToPrint(char(file)));
     printToScreen(msg, opt);
 
   end

src/group_level/findSubjectConImage.m

@@ -48,6 +48,8 @@
   ffxDir = getFFXdir(subLabel, opt);
   load(fullfile(ffxDir, 'SPM.mat'));
 
+  printToScreen(sprintf('\n\nFor subject: %s', subLabel), opt);
+
   for iCon = 1:numel(contrastName)
 
     % find which contrast of that subject has the name of the contrast
@@ -56,7 +58,8 @@
 
     if isempty(conIdx)
 
-      msg = sprintf('Skipping subject %s. Could not find a contrast named %s\nin %s.\n', ...
+      msg = sprintf(['\n\nSkipping subject %s. ', ...
+                     'Could not find a contrast named %s\nin %s.\n'], ...
                     subLabel, ...
                     contrastName{iCon}, ...
                     fullfile(ffxDir, 'SPM.mat'));
@@ -77,7 +80,14 @@
       end
 
       fileName = sprintf('con_%0.4d.nii', conIdx);
-      file{iCon, 1} = validationInputFile(ffxDir, fileName, smoothPrefix);
+      fileName = validationInputFile(ffxDir, fileName, smoothPrefix);
+
+      msg = sprintf('\ncontrast "%s" in image:\n\t%s',  ...
+                    contrastName{iCon}, ...
+                    pathToPrint(fileName));
+      printToScreen(msg, opt);
+
+      file{iCon, 1} = fileName;
 
     end
 

src/workflows/saveAndRunWorkflow.m

@@ -8,11 +8,14 @@
   %
   % :param matlabbatch: list of SPM batches
   % :type matlabbatch: structure
+  %
   % :param batchName: name of the batch
   % :type batchName: string
+  %
   % :param opt: structure or json filename containing the options. See
   %             ``checkOptions`` and ``loadAndCheckOptions``.
   % :type opt: structure
+  %
   % :param subLabel: subject label
   % :type subLabel: string
   %