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[ENH] adapt group level analysis to work with BIDS stats model #581

Merged
merged 20 commits into from
May 22, 2022
Merged

[ENH] adapt group level analysis to work with BIDS stats model #581

merged 20 commits into from
May 22, 2022

Commits on May 22, 2022

  1. RFX dir are now named based on dataset node name and contrast

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  2. extract function checkGroupBy

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  3. extract getSourceNode and getDummyContrastList

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  4. fix model

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  5. basic implementation to get dummy contrasts from lower levels

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  6. extract getInclusiveMask

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  7. add tests checkGroupBy

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  8. update setBatchFactorialDesign to new BIDS stats model

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  9. add test to make the ICV SPM mask is used in MNI space by default

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  10. update bidsRFX estimation to work with new BIDS stats model

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  11. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed May 22, 2022
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  12. factor out checkContrast function

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  13. factor out getContrastList

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  14. update test bidsRFX

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  15. Merge remote-tracking branch 'origin/olf' into olf

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  16. fix setBatchGroupLevelContrasts

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  17. make sure all dataset level Nodes are run

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  18. can choose which node to run dataset analysis on

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  19. Merge branch 'dev' of https://github.com/cpp-lln-lab/CPP_SPM into olf

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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  20. update bidsResults to work with new folder structure at the group level

    @Remi-Gau
    Remi-Gau committed May 22, 2022
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