[REF] rename variables and using bids.File instead on bids.matlab internals

[Remi-Gau]

No description provided.

[codecov]

Codecov Report

Merging #567 (153ec34) into dev (5d4a2d2) will increase coverage by 0.10%.
The diff coverage is 78.72%.

@@            Coverage Diff             @@
##              dev     #567      +/-   ##
==========================================
+ Coverage   74.78%   74.88%   +0.10%     
==========================================
  Files         184      184              
  Lines        4469     4456      -13     
==========================================
- Hits         3342     3337       -5     
+ Misses       1127     1119       -8     

Flag	Coverage Δ
unittests	74.88% <78.72%> (+0.10%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
src/IO/renameSegmentParameter.m	0.00% <0.00%> (ø)
src/IO/renameUnwarpParameter.m	0.00% <0.00%> (ø)
src/QA/anatomicalQA.m	0.00% <0.00%> (ø)
src/QA/functionalQA.m	0.00% <0.00%> (ø)
...c/batches/preproc/setBatchRenameSegmentParameter.m	0.00% <0.00%> (ø)
src/batches/setBatchReorient.m	0.00% <0.00%> (ø)
src/bids/getData.m	0.00% <0.00%> (ø)
src/utils/getDist2surf.m	0.00% <0.00%> (ø)
...orkflows/lesion/bidsLesionAbnormalitiesDetection.m	0.00% <0.00%> (ø)
src/workflows/preproc/bidsResliceTpmToFunc.m	0.00% <0.00%> (ø)
... and 40 more

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