[REF] refactor cli

[Remi-Gau]

fix #1093
fix #1071

[codecov]

Codecov Report

Merging #1096 (d63f4f4) into main (51c7010) will decrease coverage by 0.02%.
Report is 1 commits behind head on main.
The diff coverage is 81.30%.

@@            Coverage Diff             @@
##             main    #1096      +/-   ##
==========================================
- Coverage   79.53%   79.51%   -0.02%     
==========================================
  Files         248      264      +16     
  Lines        6763     6987     +224     
  Branches       40       40              
==========================================
+ Hits         5379     5556     +177     
- Misses       1368     1415      +47     
  Partials       16       16              

Flag	Coverage Δ
cli	38.99% <ø> (ø)
macos-latest_matlab-R2022b	80.76% <81.30%> (+<0.01%)	⬆️
octave	?
ubuntu-latest_matlab-R2022b	80.93% <81.30%> (-0.01%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Changed	Coverage Δ
src/parsers.py	89.09% <ø> (ø)
src/stats/subject_level/sanitizeConfounds.m	100.00% <ø> (ø)
src/stats/utils/labelActivations.m	87.80% <ø> (ø)
src/validators/isMni.m	87.50% <ø> (ø)
src/validators/isSkullstripped.m	100.00% <ø> (ø)
src/validators/isTtest.m	100.00% <ø> (ø)
src/validators/isZipped.m	100.00% <ø> (ø)
src/workflows/roi/bidsCreateROI.m	28.20% <ø> (ø)
src/cli/cliPreprocess.m	39.39% <39.39%> (ø)
src/cli/cliStats.m	50.00% <50.00%> (ø)
... and 15 more

... and 4 files with indirect coverage changes

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