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@compbiomed

Section of Computational Biomedicine

Making Translational Bioinformatics Go Faster

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  1. celda celda Public

    Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

    R 48 14

  2. singleCellTK singleCellTK Public

    Interactively analyze single cell genomic data

    R 181 78

  3. enrichR enrichR Public

    A hacky little interface to call the Enrichr functional enrichment tool from R.

    R 12 9

Repositories

Showing 10 of 18 repositories
  • singleCellTK Public

    Interactively analyze single cell genomic data

    compbiomed/singleCellTK’s past year of commit activity
    R 181 78 12 1 Updated Oct 28, 2024
  • gsea-cli-scripts Public

    Scripts for running GSEA at the command line

    compbiomed/gsea-cli-scripts’s past year of commit activity
    R 0 2 0 0 Updated Aug 21, 2024
  • RNA_Seq Public

    Nextflow pipeline for preprocessing RNA sequencing data.

    compbiomed/RNA_Seq’s past year of commit activity
    Nextflow 5 5 1 1 Updated May 16, 2024
  • singleCellTKPlus Public

    Includes extra tools in the singleCellTK framework that are not available in standard repositories

    compbiomed/singleCellTKPlus’s past year of commit activity
    R 0 1 0 1 Updated Jul 5, 2023
  • genome-reference-scripts Public

    Scripts for creating genome references (FASTA, STAR, etc.)

    compbiomed/genome-reference-scripts’s past year of commit activity
    Shell 1 0 2 0 Updated May 20, 2023
  • data-transfer-scripts Public

    Scripts for facilitating or carrying out data transfers

    compbiomed/data-transfer-scripts’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 12, 2022
  • basespace-cli-scripts Public

    Bash wrapper scripts for working with the BaseSpace command-line interface (CLI)

    compbiomed/basespace-cli-scripts’s past year of commit activity
    Shell 1 0 0 0 Updated Oct 23, 2021
  • microscopy-image-scripts Public

    Scripts for working with microscopy image files (SVS, etc.)

    compbiomed/microscopy-image-scripts’s past year of commit activity
    Shell 0 0 0 0 Updated Aug 4, 2021
  • sctk-kubernetes Public
    compbiomed/sctk-kubernetes’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 9, 2020
  • model-selection Public
    compbiomed/model-selection’s past year of commit activity
    R 0 0 0 0 Updated Aug 13, 2019
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