Skip cell annotation if cell annotation sources empty #35
Workflow file for this run
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| name: Docker Image CI | |
| on: | |
| push: | |
| branches: [ 'main' ] | |
| pull_request: | |
| branches: [ 'main' ] | |
| release: | |
| types: [published] | |
| env: | |
| IMAGE: jirinovo/scdrake | |
| TEST_TAG: test | |
| jobs: | |
| docker-build-test-push: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Get scdrake package version from DESCRIPTION | |
| run: | | |
| pkg_version=$(grep -P '^Version: \d+\.\d+\.\d+$' DESCRIPTION | cut -d' ' -f2) | |
| echo "pkg_version=$pkg_version" >> $GITHUB_ENV | |
| echo "scdrake package version: $pkg_version" | |
| - name: Check that tag matches package version in DESCRIPTION | |
| if: github.event_name == 'release' | |
| run: | | |
| echo "pkg_version: $pkg_version" | |
| test -n "$pkg_version" || (echo "'Version:' not found in DESCRIPTION" && false) | |
| test "v$pkg_version" == "${{ github.event.release.tag_name }}" \ | |
| || (echo "'Version: $pkg_version' in DESCRIPTION does not match current git tag ('${{ github.event.release.tag_name }}')" && false) | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Free disk space | |
| run: | | |
| sudo rm -rf \ | |
| /usr/share/dotnet /usr/local/lib/android /opt/ghc \ | |
| /usr/local/share/powershell /usr/share/swift /usr/local/.ghcup \ | |
| /usr/lib/jvm || true | |
| # - name: Free Disk Space (Ubuntu) | |
| # uses: jlumbroso/free-disk-space@main | |
| # with: | |
| # tool-cache: false | |
| # android: true | |
| # dotnet: true | |
| # haskell: true | |
| # large-packages: false | |
| # docker-images: false | |
| # swap-storage: true | |
| - name: Build and export test image | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| build-args: | | |
| "SCDRAKE_VERSION=${{ env.pkg_version }}" | |
| load: true | |
| tags: ${{ env.IMAGE }}:${{ env.TEST_TAG }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=min | |
| - name: Run test image | |
| run: | | |
| docker run -d \ | |
| --name scdrake_test \ | |
| -v $(pwd):/home/rstudio/scdrake_source \ | |
| -e USERID=$(id -u) \ | |
| -e GROUPID=$(id -g) \ | |
| ${{ env.IMAGE }}:${{ env.TEST_TAG }} | |
| - name: Test image | |
| run: | | |
| docker exec -w /home/rstudio/scdrake_source scdrake_test \ | |
| r --interactive -L /usr/local/lib/R/site-library -t dev/run_tests.R \ | |
| --no-test-pipeline \ | |
| --output-dir /home/rstudio/scdrake_test_summary | |
| - name: Copy test results | |
| if: always() | |
| run: | | |
| sudo docker cp scdrake_test:/home/rstudio/scdrake_test_summary / | |
| - name: Upload test results | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: scdrake_test_summary | |
| path: /scdrake_test_summary/ | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.IMAGE }} | |
| tags: | | |
| type=raw,value=latest,enable=${{ github.ref == format('refs/heads/{0}', 'main') }} | |
| type=semver,pattern={{version}} | |
| - name: Build and push image to Docker Hub | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| build-args: | | |
| "SCDRAKE_VERSION=${{ env.pkg_version }}" | |
| platforms: linux/amd64 | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=min | |
| - name: Rollback release | |
| if: github.event_name == 'release' && failure() | |
| uses: author/action-rollback@stable | |
| with: | |
| tag: ${{ github.event.release.tag_name }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |