Update abyss to 2.3.10 #51492
Update abyss to 2.3.10 #51492
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📝 Walkthrough📝 WalkthroughWalkthroughThe pull request introduces modifications to the Possibly related PRs
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/abyss/build.sh (1)
15-16: Good addition ofautoreconfand improved command formatting.The addition of
autoreconf -ifensures that the configure script and related files are up-to-date, which is particularly useful when building from a development version or when autotools files have been modified.The multi-line formatting of the
./configurecommand improves readability.For consistency with the rest of the script, consider using double quotes for the
--prefixargument:-./configure --prefix="${PREFIX}" \ +./configure --prefix="${PREFIX}" \
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📒 Files selected for processing (3)
- recipes/abyss/build.sh (2 hunks)
- recipes/abyss/config.patch (0 hunks)
- recipes/abyss/meta.yaml (4 hunks)
💤 Files with no reviewable changes (1)
- recipes/abyss/config.patch
🚧 Files skipped from review as they are similar to previous changes (1)
- recipes/abyss/meta.yaml
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🔇 Additional comments (3)
recipes/abyss/build.sh (3)
3-4: Excellent addition of environment variables for improved build process.The new environment variables enhance the build process:
M4="${BUILD_PREFIX}/bin/m4"ensures the correct m4 macro processor is used.- Appending
-L${PREFIX}/libtoLDFLAGSadds the conda environment's lib directory to the library search path.These changes improve the reliability and consistency of the build process across different environments.
22-22: Excellent improvements to the make command.The updates to the make command bring two significant improvements:
AM_CXXFLAGS="-Wall"enables all compiler warnings, helping to catch potential issues early in the development process.-j"${CPU_COUNT}"enables parallel compilation, which can significantly reduce build times, especially on multi-core systems.These changes align with best practices for building software packages and should improve both the quality and efficiency of the build process.
17-21: Good updates to configure options, but clarification needed.The changes to the configure options are generally positive:
- Explicitly setting C++14 standard ensures consistency.
- Adding --with-* options ensures correct dependency usage from the conda environment.
- Fallback to print config.log aids in debugging.
However, two points require attention:
- The addition of -O3 optimization flag may improve performance but could potentially introduce subtle bugs. Ensure thorough testing with this optimization level.
- The --without-sqlite option disables SQLite support. Is this intentional? If so, please document the reason for this change.
To verify the impact of disabling SQLite, please run:
✅ Verification successful
SQLite exclusion verified and appropriate.
No additional instances of SQLite usage found in the
recipes/abyss/codebase. The--without-sqliteflag appears to be intentionally set and does not affect other functionalities.🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check if SQLite was previously used in the package rg -i "sqlite" recipes/abyss/Length of output: 88
Update
abyss: 2.3.9 → 2.3.10recipes/abyss(click to view/edit other files)@bcgscThis pull request was automatically generated (see docs).