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Update annonars to 0.41.3 #51210

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Update annonars to 0.41.3 #51210

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ac278e7
Update annonars to 0.41.1
BiocondaBot Oct 7, 2024
d51f2d5
clean up recipe
mencian Oct 7, 2024
b4722c2
annonars: Move back protobuf to build deps
martin-g Oct 8, 2024
b1cd29f
annonars: Replace protobuf with libprotobuf (it brings protoc)
martin-g Oct 8, 2024
e578a08
Update annonars to 0.41.2
BiocondaBot Oct 10, 2024
7cae36c
add missing build requirements
tedil Oct 10, 2024
c54c030
skip linux-aarch64 build until rocksdb package has corresponding vers…
tedil Oct 10, 2024
c84f72c
add rocksdb dep to host + run sections as well
tedil Oct 10, 2024
1324ddd
Update annonars to 0.41.3
BiocondaBot Oct 16, 2024
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clean up recipe
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@mencian
mencian committed Oct 7, 2024
commit d51f2d5a3a47f6bf12c8c44071bbedfae8f6a390
6 changes: 0 additions & 6 deletions recipes/annonars/build.sh
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Original file line number Diff line number Diff line change
@@ -1,11 +1,5 @@
#!/bin/bash -e

# TODO: Remove the following export when pinning is updated and we use
# {{ compiler('rust') }} in the recipe.
export \
CARGO_NET_GIT_FETCH_WITH_CLI=true \
CARGO_HOME="${BUILD_PREFIX}/.cargo"

export BINDGEN_EXTRA_CLANG_ARGS="${CFLAGS} ${CPPFLAGS} ${LDFLAGS}"

cargo install --no-track --verbose --root "${PREFIX}" --path .
10 changes: 6 additions & 4 deletions recipes/annonars/meta.yaml
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Expand Up @@ -6,7 +6,7 @@ package:

build:
number: 0
skip: True # [osx]
skip: True # [osx]
run_exports:
- {{ pin_subpackage("annonars", max_pin="x.x") }}

Expand All @@ -18,16 +18,16 @@ requirements:
build:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
- rust >=1.30
- clangdev
- {{ compiler('rust') }}
- pkg-config
- protobuf
- make
- cmake
host:
- clangdev
- openssl
- sqlite
- clangdev
- protobuf
- zlib
run:
- sqlite
Expand All @@ -39,8 +39,10 @@ test:
about:
home: https://github.com/varfish-org/annonars
license: Apache-2.0
license_family: APACHE
license_file: LICENSE.txt
summary: 'Genome annotation based on Rust and RocksDB.'
dev_url: https://github.com/varfish-org/annonars

extra:
recipe-maintainers:
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