Update annonars to 0.41.3 #51210
Update annonars to 0.41.3 #51210
Conversation
📝 Walkthrough📝 WalkthroughWalkthroughThe changes in this pull request consist of modifications to two files: In Possibly related PRs
Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media? 🪧 TipsChatThere are 3 ways to chat with CodeRabbit:
Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments. CodeRabbit Commands (Invoked using PR comments)
Other keywords and placeholders
CodeRabbit Configuration File (
|
Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
![coderabbitai[bot]](https://avatars.githubusercontent.com/in/347564?s=60&v=4){kind=small}
There was a problem hiding this comment.
Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/annonars/meta.yaml (1)
53-54: Consider future platform supportThe commented-out section for additional platforms (specifically linux-aarch64) has been reformatted. While this change doesn't affect the current functionality, it raises a question:
Is there a plan to support linux-aarch64 in the future? If so, it might be worth adding a TODO comment or creating an issue to track this potential enhancement.
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (1)
- recipes/annonars/meta.yaml (2 hunks)
🧰 Additional context used
🪛 yamllint
recipes/annonars/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (6)
recipes/annonars/meta.yaml (6)
1-1: LGTM: Version updateThe package version has been correctly updated to 0.41.2, which aligns with the PR objectives.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
9-9: Please clarify the reason for skipping macOS buildsThe addition of
skip: True # [osx]indicates that this package will not be built for macOS. Could you please provide the rationale behind this decision? Is there a known compatibility issue or a specific reason for excluding macOS builds?
21-21: LGTM: Build requirement updatesThe change to use
{{ compiler('rust') }}instead of a specific Rust version provides more flexibility for the build process. This is a good practice.New dependencies have been added: libprotobuf, rocksdb, and snappy. These additions suggest changes in the annonars package requirements. Could you please provide more context on why these new dependencies are necessary? Are they related to new features or optimizations in annonars 0.41.2?
Also applies to: 25-27
30-30: LGTM: Host requirement updateThe addition of libprotobuf to the host requirements is consistent with its addition to the build requirements. This ensures that the protobuf library is available during both build and runtime, which is correct.
44-44: LGTM: Improved package metadataThe additions to the
aboutsection enhance the package metadata:
- The
license_family: APACHEprovides clear information about the license type.- The
dev_urlpointing to the GitHub repository is helpful for users who want to access the source code or contribute to the project.These changes improve the package documentation and are consistent with the project information.
Also applies to: 47-47
15-15: Verify SHA256 checksumThe SHA256 checksum has been updated, which is expected with the new version. To ensure the integrity of the package, please confirm that this checksum matches the official release of annonars v0.41.2.
There was a problem hiding this comment.
Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/annonars/meta.yaml (1)
21-21: Build requirement changes look good, consider updating documentation.The Rust compiler requirement has been updated to use Conda's compiler syntax, which provides more flexibility. New build requirements (libprotobuf, rocksdb, and snappy) have been added, which likely reflect changes in the package's dependencies.
These changes appear correct, but it would be beneficial to update the package documentation to reflect these new dependencies, if not already done.
Also applies to: 25-27
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (1)
- recipes/annonars/meta.yaml (2 hunks)
🧰 Additional context used
🪛 yamllint
recipes/annonars/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (6)
recipes/annonars/meta.yaml (6)
1-1: Version update looks good.The package version has been correctly updated to "0.41.2" as per the PR objectives.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
9-9: Clarify the reason for skipping OSX builds.A build skip condition for OSX has been added. Could you please provide more context on why this package should not be built for OSX? This information would be helpful for maintainers and users.
30-30: Host and run requirement changes look good, verify runtime dependencies.The addition of libprotobuf to host requirements and rocksdb to both host and run requirements is consistent with the build requirement changes. These updates appear to be correct.
To ensure completeness, please verify that all runtime dependencies are correctly listed in the run requirements section.
Also applies to: 32-32, 36-36
46-46: License family addition is appropriate.The addition of the "APACHE" license family is consistent with the existing Apache-2.0 license and provides more clarity about the package's licensing. This is a good improvement to the metadata.
49-49: Development URL addition is beneficial.The addition of the development URL, pointing to the GitHub repository, improves the package metadata. This information will be helpful for users and maintainers who want to access the source code or contribute to the project.
15-15: Verify the updated SHA256 checksum.The SHA256 checksum has been updated for the new version. Please ensure that this checksum is correct for the v0.41.2 source archive.
|
Hm, annonars is built successfully, but execution fails: https://dev.azure.com/bioconda/bioconda-recipes/_build/results?buildId=71346&view=logs&j=e14e69ff-a0ae-55c4-b71d-229b239cfb2f&t=7df82132-b284-504b-53d6-7d3e63519572&l=1498 |
Update
annonars: 0.41.0 → 0.41.3recipes/annonars(click to view/edit other files)@varfish-orgThis pull request was automatically generated (see docs).