Big PR with multiple validations - [DO NOT MERGE YET]

[ypriverol]

• Change the logic of validation, by default everything is validated, and three variables are now introduced to skip some of the validations:
  • --skip_ms_validation
  • --skip_factor_validation
  • --skip_experimental_design_validation

Factor values columns validation:

• If factor values are not provided raise an error.
• If the factor values are absent in the characteristics or comments raise an error.
• If the values in the factor value column and their corresponding counterpart are different raise an error.

Experimental design validation:

• If the data file and assay name combination are not unique raise an error.
• If source name has the same comment[technical replicate], comment[biological replicate], comment[label], comment[fraction identifier]

[github-actions]

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[ypriverol]

Related to issue: bigbio/quantms#384

[jpfeuffer]

Looks definitely safer than before.