You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
e.g. when not specifying any factor column. It should either just write the file with all the same condition, or fail with a nicer error.
Command used and terminal output
Traceback (most recent call last): File "/$user/.nextflow/pipelines/8a22de65/bigbio/quantms/bin/diann_convert.py", line 1377, in <module> cli() File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1157, in __call__ return self.main(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1078, in main rv = self.invoke(ctx) ^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1688, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1434, in invoke return ctx.invoke(self.callback, **ctx.params) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/site-packages/click/core.py", line 783, in invoke return __callback(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/site-packages/click/decorators.py", line 33, in new_func return f(get_current_context(), *args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/$user/.nextflow/pipelines/8a22de65/bigbio/quantms/bin/diann_convert.py", line 114, in convert out_msstats = out_msstats.merge( ^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/site-packages/pandas/core/frame.py", line 10490, in merge return merge( ^^^^^^ File "/usr/local/lib/python3.11/site-packages/pandas/core/reshape/merge.py", line 169, in merge op = _MergeOperation( ^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.11/site-packages/pandas/core/reshape/merge.py", line 810, in __init__ self._validate_validate_kwd(validate) File "/usr/local/lib/python3.11/site-packages/pandas/core/reshape/merge.py", line 1635, in _validate_validate_kwd raise MergeError( pandas.errors.MergeError: Merge keys are not unique in right dataset; not a many-to-one merge
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered:
Description of the bug
e.g. when not specifying any factor column. It should either just write the file with all the same condition, or fail with a nicer error.
Command used and terminal output
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: