Issues

• splisoquant_visualize.py fails to recognize output file after v4.0.0 rename (read_assignments.tsv.gz → read_info.tsv.gz)

  algbio/spl-IsoQuant#11 · Filter by author Leilingshan opened on Sep 17, 2026
  1

• spl-IsoQuant with 10x Visium HD 3' ONT full-length spatial data ?

  algbio/spl-IsoQuant#10 · Filter by author Leilingshan opened on Jun 11, 2026
  3

• Spl-IsoQuant with 10x 3' v4 single-cell

  algbio/spl-IsoQuant#9 · Filter by author Suhail221107 opened on Mar 9, 2026
  15

• Extreme memory usage (>800G and rising) in Spl-IsoQuant v2.2.0 during StereoSeq nanopore barcode calling (428M+ barcodes)

  algbio/spl-IsoQuant#6 · Filter by author chenghuihui2018 opened on Dec 16, 2025
  5

• Single-Cell Quantification from BAM File with CB and UB Tags

  algbio/spl-IsoQuant#3 · Filter by author dawangran opened on Sep 17, 2025
  1

• Assistance Needed: Generating the model.gtf File

  algbio/spl-IsoQuant#2 · Filter by author dawangran opened on Sep 17, 2025
  4

• Can spl-IsoQuant be used for 10x visium+ONT data?

  algbio/spl-IsoQuant#1 · Filter by author xyz202310 opened on Sep 15, 2025
  3