Merge pull request #96

[WIP] Notebook - general-preprocessing-rainfall_noaa
alan-turing-institute · Jul 16, 2022 · 485851d · 485851d
2 parents 7e52d2f + f201b2a
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diff --git a/.gitmodules b/.gitmodules
@@ -30,3 +30,7 @@
 	path = book/gallery/exploration/agriculture-exploration-cosmosuk
 	url = https://github.com/Environmental-DS-Book/agriculture-exploration-cosmosuk.git
 	branch = render
+[submodule "book/gallery/preprocessing/general-preprocessing-rainfall_noaa"]
+	path = book/gallery/preprocessing/general-preprocessing-rainfall_noaa
+	url = https://github.com/Environmental-DS-Book/general-preprocessing-rainfall_noaa
+	branch = render
diff --git a/book/_bibliography/references.bib b/book/_bibliography/references.bib
@@ -250,3 +250,33 @@ @misc{10.5285/b5c190e4-e35d-40ea-8fbe-598da03a1185
        year = {2021},
        topic = {agriculture-sensors-cosmosuk_documentation}
 }
+
+@article {QuantifyingCausalPathwaysofTeleconnections,
+      author = "Marlene Kretschmer and Samantha V. Adams and Alberto Arribas and Rachel Prudden and Niall Robinson and Elena Saggioro and Theodore G. Shepherd",
+      title = "Quantifying Causal Pathways of Teleconnections",
+      journal = "Bulletin of the American Meteorological Society",
+      year = "2021",
+      publisher = "American Meteorological Society",
+      address = "Boston MA, USA",
+      volume = "102",
+      number = "12",
+      doi = "10.1175/BAMS-D-20-0117.1",
+      pages= "E2247 - E2263",
+      url = "https://journals.ametsoc.org/view/journals/bams/102/12/BAMS-D-20-0117.1.xml",
+      topic = {general-preprocessing-rainfall_noaa_pipeline}
+}
+
+@article { TheNCEPNCAR40YearReanalysisProject,
+      author = "E. Kalnay and M. Kanamitsu and R. Kistler and W. Collins and D. Deaven and L. Gandin and M. Iredell and S. Saha and G. White and J. Woollen and Y. Zhu and M. Chelliah and W. Ebisuzaki and W. Higgins and J. Janowiak and K. C. Mo and C. Ropelewski and J. Wang and A. Leetmaa and R. Reynolds and Roy Jenne and Dennis Joseph",
+      title = "The NCEP/NCAR 40-Year Reanalysis Project",
+      journal = "Bulletin of the American Meteorological Society",
+      year = "1996",
+      publisher = "American Meteorological Society",
+      address = "Boston MA, USA",
+      volume = "77",
+      number = "3",
+      doi = "10.1175/1520-0477(1996)077<0437:TNYRP>2.0.CO;2",
+      pages=      "437 - 472",
+      url = "https://journals.ametsoc.org/view/journals/bams/77/3/1520-0477_1996_077_0437_tnyrp_2_0_co_2.xml",
+      topic = {general-preprocessing-rainfall_noaa_dataset}
+}
diff --git a/book/_toc.yml b/book/_toc.yml
@@ -22,6 +22,9 @@ parts:
         title: SEVIRI Level 1.5 (EUMESAT)
   - file: gallery/preprocessing
     title: Preprocessing
+    sections:
+      - file: gallery/preprocessing/general-preprocessing-rainfall_noaa/general-preprocessing-rainfall_noaa
+        title: Rainfall NCEP/NCAR (NOAA)
   - file: gallery/modelling
     title: Modelling
     sections:

diff --git a/book/gallery/preprocessing/general-preprocessing-rainfall_noaa b/book/gallery/preprocessing/general-preprocessing-rainfall_noaa
diff --git a/misc/rohub/register.py b/misc/rohub/register.py
@@ -10,28 +10,27 @@
 
 # metadata
 metadata_contribution = {
-    'environment': 'agriculture',
+    'environment': 'general',
     'topic': 'exploration',
-    'filename': 'agriculture-exploration-cosmosuk',
-    'title': 'Cosmos-UK soil moisture',
-    'inputs': {'input1':{'name':"Inputs of the Jupyter Notebook - Cosmos-UK soil moisture",
-                         'url':"https://doi.org/10.5281/zenodo.6567018"},
+    'filename': 'general-preprocessing-rainfall_noaa',
+    'title': 'Concatenating a gridded rainfall reanalysis dataset into a time series',
+    'inputs': {'input1':{'name':"Inputs of the Jupyter Notebook - Concatenating a gridded rainfall reanalysis dataset into a time series",
+                         'url':"https://downloads.psl.noaa.gov/Datasets/ncep.reanalysis.derived/surface_gauss/prate.sfc.mon.mean.nc"},
                },
-    'outputs': {'content': 'table and figures',
-               'url': "https://doi.org/10.5281/zenodo.6566942"},
+    'outputs': {'content': 'figures',
+               'url': "https://doi.org/10.5281/zenodo.6824189"},
     'author_GHuser': 'Environmental-DS-Book',
-    'references':{'ref1':{'name':'Daily and sub-daily hydrometeorological and soil data (2013-2019) [cosmos-uk]','url':"https://doi.org/10.5285/b5c190e4-e35d-40ea-8fbe-598da03a1185"},
-                  'ref2':{'name':'Soil water content in southern england derived from a cosmic-ray soil moisture observing system – cosmos-uk','url':"https://doi.org/10.1002/hyp.10929"},
-                  'ref3':{'name':'Cosmos: the cosmic-ray soil moisture observing system','url':"https://doi.org/10.5194/hess-16-4079-2012"}},
-    'sketch': {'title':'Image showing interactive plot of IceNet seasonal forecasts of Artic sea ice according to four lead times and months in 2020',
-               'path':'_temp/rohub/agriculture-exploration-cosmosuk/interactive_plotting.png'}
+    'references':{'ref1':{'name':'The NMC/NCAR 40-year reanalysis project','url':"http://doi.org/10.1175/1520-0477(1996)077%3C0437:TNYRP%3E2.0.CO;2"},
+                  'ref1':{'name':'Quantifying Causal Pathways of Teleconnections','url':"https://doi.org/10.1175/BAMS-D-20-0117.1"}},
+    'sketch': {'title':'Image showing interactive plot of global monthly precipitation mean computed from NCEP/NCAR reanalysis dataset',
+               'path':'_temp/rohub/general-preprocessing-rainfall_noaa/interactive_plotting.png'}
 }
 
 title_nb = metadata_contribution['title']
 
 metadata_rohub = {
     'title': f'{title_nb} (Jupyter Notebook) published in the Environmental Data Science book',
-    'research_areas': ['Environmental research', 'Soil science', 'Hydrology'],
+    'research_areas': ['Environmental research', 'Climatology'],
     'description': f'The research object refers to the {title_nb} notebook published in the Environmental Data Science book.',
     'ros_type': 'Executable Research Object',
     'ros_template': 'Executable Research Object folders structure',
@@ -44,31 +43,49 @@
 ro_ros_type=metadata_rohub['ros_type']
 ro_ros_template=metadata_rohub['ros_template']
 
-ro = rohub.ros_create(title=ro_title, research_areas=ro_research_areas, description=ro_description, ros_type=ro_ros_type, template=ro_ros_template)
+ro = rohub.ros_create(title=ro_title, research_areas=ro_research_areas, description=ro_description, ros_type=ro_ros_type, use_template=ro_ros_template)
 
 # edition
 authors=[
-        {"user_id": "https://github.com/acocac",
-         "display_name": "Alejandro Coca-Castro",
-         "name": "Alejandro Coca-Castro",
-         "affiliation": "The Alan Turing Institute"},
-        # {"user_id": "https://orcid.org/0000-0003-0808-3480",
-        #  "display_name": "Raquel Carmo",
-        #  "name": "Raquel Carmo",
-        #  "affiliation": "European Space Agency Φ-lab"},
+        {"user_id": "https://github.com/timo0thy",
+         "display_name": "Timothy Lam",
+         "name": "Timothy Lam",
+         "email": "tlam@turing.ac.uk",
+         "affiliation": "University of Exeter"},
+        {"user_id": "https://github.com/MarleneKretschmer",
+         "display_name": "Marlene Kretschmer",
+         "name": "Marlene Kretschmer",
+         "email": "m.j.a.kretschmer@reading.ac.uk",
+         "affiliation": "University of Reading"},
+        {"user_id": "https://github.com/svadams",
+         "display_name": "Samantha Adams",
+         "name": "Samantha Adams",
+         "email": "samantha.adams@metoffice.gov.uk",
+         "affiliation": "Met Office Informatics Lab"},
+        {"user_id": "https://github.com/RPrudden",
+         "display_name": "Rachel Prudden",
+         "name": "Rachel Prudden",
+         "email": "rachel.prudden@informaticslab.co.uk",
+         "affiliation": "Met Office Informatics Lab"},
+        {"user_id": "https://github.com/ESaggioro",
+         "display_name": "Elena Saggioro",
+         "name": "Elena Saggioro",
+         "email": "e.saggioro@pgr.reading.ac.uk",
+         "affiliation": "University of Reading"},
         ]
 
 ro.set_authors(agents=authors)
 
 reviewers=[
     {"user_id": "https://github.com/dorankhamis",
-     "display_name": "Doran Khamis",
-     "name": "Doran Khamis",
-     "affiliation": "UK Centre for Ecology & Hydrology"},
-    {"user_id": "https://github.com/mattfry-ceh",
-     "display_name": "Matt Fry",
-     "name": "Matt Fry",
-     "affiliation": "UK Centre for Ecology & Hydrology"},
+     "display_name": "Nick Homer",
+     "name": "Nick Homer",
+     "email": "nhomer@turing.ac.uk",
+     "affiliation": "University of Edinburgh"},
+    {"user_id": "https://github.com/acocac",
+     "display_name": "Alejandro Coca-Castro",
+     "name": "Alejandro Coca-Castro",
+     "affiliation": "The Alan Turing Institute"},
         ]