t-sne on binary regulon activity

[robertzeibich]

I am wondering how plot d was generated.

I was thinking of the following:

#binary_mtx
binary_mtx, auc_thresholds = binarize(auc_mtx, num_workers=24)
adata.obsm['X_aucell_bin'] = np.array(binary_mtx)
sc.tl.tsne(adata, use_rep='X_aucell_bin')
adata.obsm['X_tsne_aucell_bin'] = adata.obsm.pop('X_tsne')

However, I saw that each cell type had the extension GRN.