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24 Open 30 Closed
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Issues list

Error using as.treedata() for pml object
#127 opened Aug 21, 2024 by gdunshea
1
read.nextstrain.json fails on divergence trees
#126 opened Jul 9, 2024 by CecileTK
phyloXML and missing branch lengths
#124 opened Feb 2, 2024 by jvolkening
6 of 8 tasks
[feature request] text= argument for read.raxml function
#122 opened Jan 10, 2024 by Fan-iX
3 tasks done
read.raxml() parsing error
#121 opened Dec 17, 2023 by gunjanpandey
root function loses tip.label and node.label
#120 opened Dec 1, 2023 by jayoung
5
Issue with drop.tip function in removing node C from tree structure A->B->C
#119 opened Dec 1, 2023 by moqi111
1
read.iqtree and regular bootstrap
#114 opened Oct 13, 2023 by LPDagallier
support for LSD2 dating file import
#111 opened Sep 17, 2023 by sihellem
2
S3 overwrite warning in R version 4.3.1 (2023-06-16) with treeio 1.24.3
#109 opened Aug 17, 2023 by ckeeling
2
Just wonder, are the functions drop.tip() and tree_subset() same in mathematics?
#108 opened Aug 10, 2023 by judyssister
"elf_dynamic_array_reader.h:61 tag not found" when loading an iqtree file
#98 opened Jul 6, 2023 by vmkalbskopf
2
as.treedata sequence length
#91 opened Dec 14, 2022 by antoine4ucsd
1
as.treedata creating label.x and label.y columns in some cases
#87 opened Oct 7, 2022 by nick-youngblut
@xiangpin
as.phylo C stack overflow caused by deep trees
#78 opened Apr 25, 2022 by teng-gao
@xiangpin
11
Issue with the read.paml_rst function while reading rst file from CodeML/PAML
#72 opened Nov 27, 2021 by JPFQueiroz
Issue with loading MCC tree from BEAST v 1.10.4
#71 opened Nov 22, 2021 by taylorpaisie
4
tbl_tree object to phylo object lost bootstrap column
#49 opened Mar 10, 2021 by ypchan
2
treeio read tree files form nexus format with extra quotation marks
#47 opened Mar 2, 2021 by wook2014
3
Drop tips for BEAST trees
#38 opened Aug 22, 2020 by ksw9
1
Error while reading mlc file from CODEML
#34 opened Mar 26, 2020 by MickAmest
2
Mapping between phylogenetic tree edge table and the placement post-traversal edge
#31 opened Dec 30, 2019 by HollyKArnold
Node Field in read.jplace()
#22 opened Oct 13, 2019 by HollyKArnold
2
Feature Request: Import MCMCTree Result Tree (PAML)
#13 opened Oct 13, 2018 by jsoghigian
1
4
ProTip! What’s not been updated in a month: updated:<2024-10-14.