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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1k 253

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 838 173

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 223 74

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 179 37

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    33 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 94 repositories
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 12 4 0 0 Updated Oct 14, 2024
  • ggsc Public

    🧠 Visualizing Single Cell and Spatial Transcriptomics

    YuLab-SMU/ggsc’s past year of commit activity
    R 40 11 0 0 Updated Oct 13, 2024
  • SVP Public
    YuLab-SMU/SVP’s past year of commit activity
    R 5 GPL-3.0 0 0 0 Updated Oct 12, 2024
  • sclet Public

    A Lightweight Toolkit for Single-Cell Data Analysis

    YuLab-SMU/sclet’s past year of commit activity
    R 2 5 1 0 Updated Oct 9, 2024
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 1,010 253 322 1 Updated Oct 7, 2024
  • ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    YuLab-SMU/ChIPseeker’s past year of commit activity
    R 223 74 102 0 Updated Oct 6, 2024
  • ggtreeSpace Public

    🕸️Exploring phylomorphospace using 'ggtree'

    YuLab-SMU/ggtreeSpace’s past year of commit activity
    R 5 2 0 0 Updated Oct 6, 2024
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot’s past year of commit activity
    R 228 65 125 0 Updated Oct 6, 2024
  • obolite Public

    Create sqlite from an obo file

    YuLab-SMU/obolite’s past year of commit activity
    R 0 1 0 0 Updated Sep 28, 2024
  • wget Public

    download files in R using wget -c

    YuLab-SMU/wget’s past year of commit activity
    R 17 3 0 0 Updated Sep 24, 2024

Most used topics

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