Update github actions and channel priorities

WGLab · Sep 18, 2024 · a2040b8 · a2040b8
1 parent c052dc2
commit a2040b8
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Showing 2 changed files with 11 additions and 2 deletions.
diff --git a/.github/workflows/build-test.yml b/.github/workflows/build-test.yml
@@ -33,13 +33,22 @@ jobs:
         python-version: 3.9
         auto-activate-base: false
 
+    - name: Check conda environment activation
+      shell: bash --login {0}
+      run: |
+        conda info --envs
+        which python
+        python --version
+
     - name: Build LongReadSum
       shell: bash --login {0}  # --login enables PATH variable access
       run: |
+        source activate longreadsum
         make
 
     - name: Run tests
       shell: bash --login {0}
       run: |
+        source activate longreadsum
         mkdir output  # Unit test output folder
         python -m pytest
diff --git a/environment.yml b/environment.yml
@@ -1,10 +1,10 @@
 name: longreadsum
 channels:
-  - bioconda
+  - defaults
   - anaconda
   - conda-forge
+  - bioconda
   - jannessp  # for pod5
-  - defaults
 dependencies:
   - python
   - numpy