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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    245 418

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 197 91

  3. dragonstar2019 dragonstar2019 Public

    136 95

  4. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 112 8

  5. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 104 35

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 96 54

Repositories

Showing 10 of 91 repositories
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH’s past year of commit activity
    Python 16 MIT 2 2 0 Updated Oct 19, 2025
  • PubMind Public

    PubMind is a large language model (LLM)-assisted framework for Publication Mutation and information Discovery, designed to extract variant–disease–pathogenicity relationships directly from biomedical literature.

    WGLab/PubMind’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Oct 13, 2025
  • PipeVar Public

    Pipeline to call phenotype variant

    WGLab/PipeVar’s past year of commit activity
    Nextflow 0 0 0 0 Updated Oct 13, 2025
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    WGLab/ContextSV’s past year of commit activity
    C++ 2 MIT 0 5 0 Updated Sep 19, 2025
  • LongReadSum Public
    WGLab/LongReadSum’s past year of commit activity
    C++ 24 MIT 3 4 0 Updated Sep 10, 2025
  • NanoRepeat Public

    NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

    WGLab/NanoRepeat’s past year of commit activity
    Python 20 MIT 2 6 0 Updated Sep 10, 2025
  • PhenoGPT2 Public

    PhenoGPT2 is an advanced phenotype recognition model, leveraging the robust capabilities of large language models.

    WGLab/PhenoGPT2’s past year of commit activity
    Python 4 MIT 1 5 0 Updated Aug 27, 2025
  • RareDAI Public

    RareDAI is an advanced LLM technique, fine-tuned on LLama 3.1 models, designed to support genetic counselors and patients in choosing the most appropriate molecular genetic tests, such as gene panels or WES/WGS, through clear and comprehensive explanations.

    WGLab/RareDAI’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 26, 2025
  • RankVar Public
    WGLab/RankVar’s past year of commit activity
    Python 2 0 0 0 Updated Aug 26, 2025
  • MultiSHAP Public
    WGLab/MultiSHAP’s past year of commit activity
    Python 2 0 0 0 Updated Aug 1, 2025
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