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Error: invalid alleles found in BIM file #9

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zoeward-nz opened this issue Dec 23, 2021 · 1 comment
Open

Error: invalid alleles found in BIM file #9

zoeward-nz opened this issue Dec 23, 2021 · 1 comment

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@zoeward-nz
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I am using Illumina GSA-24v3-0 chip and have followed the tutorial to make the SNPTable.
When I try to run convert_bim.pl with -intype top (which I believe it is)
I get the Error:
invalid alleles found in BIM file (the -intype of 'top' indicates possible alleles as ACGT0): <0 rs111033319 0 0 0 D>

@kaichop
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kaichop commented Dec 23, 2021 via email

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