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Human v1.1.1
- #134
#134
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haowang-bioinfo
merged 30 commits into
master
SysBioChalmers/Human-GEM:master
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devel
SysBioChalmers/Human-GEM:devel
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Sep 25, 2019
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Human v1.1.1
#134
haowang-bioinfo
merged 30 commits into
master
SysBioChalmers/Human-GEM:master
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devel
SysBioChalmers/Human-GEM:devel
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Commits
Commits on May 27, 2019
feat: curateExchangeReactions2 script to add/revise some exchange rxns
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feat: docModelChanges more generalized version of docRxnChanges
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feat: curateExchangeReactions2 add metabolite change notes
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fix: curateExchangeReactions2 apply change notes to all mets affected
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feat: writeModelChanges more generalized version of writeRxnChanges
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refactor: curateExchangeReactions2 reorganize to improve clarify
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Commits on May 28, 2019
feat: writeModelChanges improve compatibility with complex filenames
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style: shorten script name
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Commits on Jul 17, 2019
style: rename rxnMNXID and metMNXID to rxnMetaNetXID and metMetaNetXID
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Commits on Jul 18, 2019
feat: annotateModel new function adds rxn, met, gene annotation to model
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feat: translateGrRules allow more flexibility in targetFormat input
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style: rename writecell function to writecell2file
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Commits on Jul 19, 2019
cleanup: remove plotting functions
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Commits on Jul 31, 2019
Merge branch 'fix/rename_writecell' into docModelChanges
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fix: update use of writecell function to writecell2file
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Commits on Aug 1, 2019
Merge pull request #118 from SysBioChalmers/docModelChanges
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Merge branch 'devel' into addExchangeRxns
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fix: curateExchangeRxns2 update script to edit annotation JSON files
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fix: writecell2file use "clock" instead of "today"
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fix: curateExchangeRxns2 update new subsystems to be cells not strings
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Commits on Aug 18, 2019
feat: annotateModel add SBO terms
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Commits on Sep 16, 2019
Merge pull request #122 from SysBioChalmers/annotRxnMetGene
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Commits on Sep 19, 2019
Merge branch 'devel' into addExchangeRxns
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doc: update filenames and update numbering of new reactions
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Commits on Sep 20, 2019
fix: rename log files by appending issue number
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Merge pull request #123 from SysBioChalmers/addExchangeRxns
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Commits on Sep 22, 2019
style: capitalize model filenames
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style: capitalize model filenames among relevant functions/scripts
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Commits on Sep 24, 2019
Merge pull request #133 from SysBioChalmers/capitalizeModelNames
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chore: update HumanGEM.mat and HumanGEM.yml
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