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refactor: broaden container settings args #390
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containerskey #387PR 2/2 split from #329. This is a continuation of #387. We break the signature of
run_container_*andprepare_volumeto introduce the more genericProcessedContainerSettingsparameter, which helps pass more options to container frameworks.This will be used for dsub testing, and also happens to be used in #329 to avoid the algorithm-container dependency diamond.
This also moves
enable_profilinginto containers. This was an oversight from my part which I missed in the #387 merge.