Fixed overlaying issues and updated examples

examples/plotting.ipynb

@@ -92,7 +92,10 @@
     "\n",
     "# Legend is supressed unless asked for specifically\n",
     "plot!(legend=true)\n",
-    "# Default labels are subset.identifier.name but can be changed by providing a label argument"
+    "# Default labels are subset.identifier.name but can be changed by providing a label argument\n",
+    "\n",
+    "# It is recommended to add atleast 10 pt margin to the left to accomodate the y-axis label\n",
+    "plot!(left_margin=10Plots.pt)\n"
    ]
   },
   {
@@ -113,7 +116,8 @@
     "# plotlyjs()   # Use for interactive plot, can only save png\n",
     "\n",
     "n_e = GGDUtils.get_prop_with_grid_subset_index(dd.edge_profiles.ggd[1].electrons.density, 5)\n",
-    "plot(dd.edge_profiles.grid_ggd, n_e, colorbar_title=\"Electrons density / \" * L\"m^{-3}\")"
+    "plot(dd.edge_profiles.grid_ggd, n_e, colorbar_title=\"Electrons density / \" * L\"m^{-3}\",\n",
+    "     left_margin=10Plots.pt)"
    ]
   },
   {
@@ -134,7 +138,9 @@
     "# plotlyjs()   # Use for interactive plot, can only save png\n",
     "\n",
     "plot(dd.edge_profiles.grid_ggd, n_e) # Note default label in colorbar\n",
-    "plot!(space, GGDUtils.get_grid_subset_with_index(grid_ggd, 16), linecolor=:red, linewidth=2, linestyle=:solid, label=\"Separatix\", legend=true)"
+    "plot!(space, GGDUtils.get_grid_subset_with_index(grid_ggd, 16), linecolor=:red,\n",
+    "      linewidth=2, linestyle=:solid, label=\"Separatix\", legend=true,\n",
+    "      left_margin=10Plots.pt)"
    ]
   }
  ],

examples/plotting_interferometer.ipynb

@@ -77,7 +77,7 @@
     "\n",
     "plot(space)\n",
     "plot!(ids.interferometer) # Default plot_type is :los \n",
-    "plot!(legend=true)"
+    "plot!(legend=true, left_margin=10Plots.pt)"
    ]
   },
   {
@@ -99,7 +99,7 @@
     "\n",
     "plot(space)\n",
     "plot!(ids.interferometer, mirror_length=0.7, linewidth=4, mirror_thickness=0.2)\n",
-    "plot!(legend=true)"
+    "plot!(legend=true, left_margin=10Plots.pt)"
    ]
   },
   {
@@ -121,7 +121,7 @@
     "\n",
     "plot(space)\n",
     "plot!(ids.interferometer, mirror=false)\n",
-    "plot!(legend=true)"
+    "plot!(legend=true, left_margin=10Plots.pt)"
    ]
   },
   {
@@ -143,7 +143,7 @@
     "\n",
     "plot(space)\n",
     "plot!(ids.interferometer.channel[1], label=\"Channel 1\")\n",
-    "plot!(legend=true)"
+    "plot!(legend=true, left_margin=10Plots.pt)"
    ]
   },
   {
@@ -166,7 +166,7 @@
     "gr()           # Fast and can save pdf\n",
     "# plotlyjs()   # Use for interactive plot, can only save png\n",
     "\n",
-    "plot(ids.interferometer, plot_type=:n_e)"
+    "plot(ids.interferometer, plot_type=:n_e, left_margin=10Plots.pt)"
    ]
   },
   {
@@ -179,7 +179,7 @@
     "gr()           # Fast and can save pdf\n",
     "# plotlyjs()   # Use for interactive plot, can only save png\n",
     "\n",
-    "plot(ids.interferometer, plot_type=:n_e_average)"
+    "plot(ids.interferometer, plot_type=:n_e_average, left_margin=10Plots.pt)"
    ]
   },
   {
@@ -199,7 +199,28 @@
     "gr()           # Fast and can save pdf\n",
     "# plotlyjs()   # Use for interactive plot, can only save png\n",
     "\n",
-    "plot(ids.interferometer.channel[1], plot_type=:n_e_average)"
+    "plot(ids.interferometer.channel[1], plot_type=:n_e_average, left_margin=10Plots.pt)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Plotting the interferometer geometry on top of 2D property data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "gr()\n",
+    "\n",
+    "n_e = GGDUtils.get_prop_with_grid_subset_index(ids.edge_profiles.ggd[1].electrons.density, 5)\n",
+    "plot(ids.edge_profiles.grid_ggd, n_e, colorbar_title=\"Electrons density / m^(-3)\", left_margin=10Plots.pt)\n",
+    "plot!(space)\n",
+    "plot!(ids.interferometer, legend=true, size=[635, 900]) # Adding a size comment to make plot aspect ratio better"
    ]
   }
  ],

src/recipes.jl

@@ -6,6 +6,7 @@ import Statistics: norm, dot
     nodes = space.objects_per_dimension[1].object
     edges = space.objects_per_dimension[2].object
     legend --> false
+    subplot --> 1
     linewidth --> 0.2
     linecolor --> :black
     size --> [600, 900]
@@ -40,6 +41,7 @@ end
     edges = space.objects_per_dimension[2].object
     cells = space.objects_per_dimension[3].object
     legend --> false
+    subplot --> 1
     linewidth --> 0.2
     linecolor --> :black
     size --> [600, 900]
@@ -103,7 +105,7 @@ end
     nodes = space.objects_per_dimension[1].object
     cells = space.objects_per_dimension[3].object
     legend --> false
-    size --> [600, 900]
+    size --> [635, 900]
     xaxis --> "R / m"
     yaxis --> "Z / m"
     layout := @layout [a{0.95w} b]
@@ -219,6 +221,7 @@ end
 @recipe function f(
     ifo_ch_los::OMAS.interferometer__channel___line_of_sight,
 )
+    subplot --> 1
     size --> [600, 900]
     xaxis --> "R / m"
     yaxis --> "Z / m"
@@ -303,6 +306,7 @@ end
             ifo_ch.n_e_line_average
         end
     else
+        subplot --> 1
         xaxis --> "time / s"
         yaxis --> "Integrrated n_e / m^-2"
         @series begin
@@ -316,6 +320,7 @@ end
 @recipe function f(
     ifo_ch_n_e_line_average::OMAS.interferometer__channel___n_e_line_average,
 )
+    subplot --> 1
     xaxis --> "time / s"
     yaxis --> "Average n_e / m^-3"
     @series begin