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Release 0.8.4 checks and updates #1757

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merged 4 commits into from
Oct 17, 2024

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@tangy5 tangy5 commented Oct 16, 2024

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tangy5 added 4 commits October 16, 2024 16:13
Signed-off-by: tangy5 <yuchengt@nvidia.com>
Signed-off-by: tangy5 <yuchengt@nvidia.com>
Signed-off-by: tangy5 <yuchengt@nvidia.com>
Signed-off-by: tangy5 <yuchengt@nvidia.com>
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tangy5 commented Oct 17, 2024

HI @SachidanandAlle , we are dropping python 3.8 from monai and monailabel.
Can you help remove the Branch protection rules of python 3.8 for python app workflow? this requires admin auth.
Thanks

@tangy5 tangy5 changed the title [DO NOT MERGE] Release 0.8.4 checks and updates Release 0.8.4 checks and updates Oct 17, 2024
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SachidanandAlle commented Oct 17, 2024

@tangy5 please make sure all the GPU tests cases pass before making the final release.

@SachidanandAlle SachidanandAlle merged commit 8a00912 into Project-MONAI:main Oct 17, 2024
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KumoLiu pushed a commit that referenced this pull request Oct 29, 2024
* Release 0.8.4 checks and updates

Signed-off-by: tangy5 <yuchengt@nvidia.com>

* Trigger monai container update

Signed-off-by: tangy5 <yuchengt@nvidia.com>

* Drop python 3.8

Signed-off-by: tangy5 <yuchengt@nvidia.com>

* Drop python 3.8

Signed-off-by: tangy5 <yuchengt@nvidia.com>

---------

Signed-off-by: tangy5 <yuchengt@nvidia.com>
Co-authored-by: tangy5 <yuchengt@nvidia.com>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
SachidanandAlle added a commit that referenced this pull request Nov 21, 2024
* fix ignite-info issue

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* update monai version

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* revert version change

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* temp fix

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* minor fix

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* minor fix

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* update to 3.9 and drop 3.8

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* [pre-commit.ci] pre-commit autoupdate (#1716)

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](pre-commit/pre-commit-hooks@v4.5.0...v4.6.0)
- [github.com/psf/black: 24.3.0 → 24.4.2](psf/black@24.3.0...24.4.2)
- [github.com/psf/black: 24.3.0 → 24.4.2](psf/black@24.3.0...24.4.2)
- [github.com/PyCQA/flake8: 7.0.0 → 7.1.0](PyCQA/flake8@7.0.0...7.1.0)
- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.1](pre-commit/mirrors-mypy@v1.9.0...v1.10.1)
- [github.com/asottile/pyupgrade: v3.15.2 → v3.16.0](asottile/pyupgrade@v3.15.2...v3.16.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* Bump urllib3 from 2.2.1 to 2.2.2 (#1753)

Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.1 to 2.2.2.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](urllib3/urllib3@2.2.1...2.2.2)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* Bump requests from 2.31.0 to 2.32.2 (#1754)

Bumps [requests](https://github.com/psf/requests) from 2.31.0 to 2.32.2.
- [Release notes](https://github.com/psf/requests/releases)
- [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md)
- [Commits](psf/requests@v2.31.0...v2.32.2)

---
updated-dependencies:
- dependency-name: requests
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* ENH: Allow newer version of dependencies (#1748)

Pinning basic packages such as "requests" to a specific patch level release such "2.31.0" is too strict. New releases and especially new patch releases allow to use latest security updates of various packages.

Signed-off-by: James Butler <james.butler@revvity.com>
Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* Release 0.8.4 checks and updates (#1757)

* Release 0.8.4 checks and updates

Signed-off-by: tangy5 <yuchengt@nvidia.com>

* Trigger monai container update

Signed-off-by: tangy5 <yuchengt@nvidia.com>

* Drop python 3.8

Signed-off-by: tangy5 <yuchengt@nvidia.com>

* Drop python 3.8

Signed-off-by: tangy5 <yuchengt@nvidia.com>

---------

Signed-off-by: tangy5 <yuchengt@nvidia.com>
Co-authored-by: tangy5 <yuchengt@nvidia.com>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* Add MITK as supported platform (#1759)

Signed-off-by: Ashis Ravindran <ashis.ravindran@dkfz-heidelberg.de>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* Add MITK to installation docs (#1761)

* Add MITK as supported platform

Signed-off-by: Ashis Ravindran <ashis.ravindran@dkfz-heidelberg.de>

* Update link to MONAI Label repo

Signed-off-by: Ashis Ravindran <ashis.ravindran@dkfz-heidelberg.de>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Signed-off-by: Ashis Ravindran <ashis.ravindran@dkfz-heidelberg.de>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* fix(mode): no need to initialize toolbar service (#1763)

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* BUG: Fix traceback in restored transform (#1766)

Using transforms from MONAI and MONAILabel can result in metadata containing torch.tensors and torch.Sizes. This change fixes a traceback in the restored transform resulting from an incompatibility between torch datatypes and numpy.any().
Signed-off-by: Thomas Kierski <thomas.kierski@revvity.com>
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* Revert "update to 3.9 and drop 3.8"

This reverts commit 8ced475.

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* revert

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* revert

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

* revert

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
Signed-off-by: dependabot[bot] <support@github.com>
Signed-off-by: James Butler <james.butler@revvity.com>
Signed-off-by: tangy5 <yuchengt@nvidia.com>
Signed-off-by: Ashis Ravindran <ashis.ravindran@dkfz-heidelberg.de>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: James Butler <jamesobutler@users.noreply.github.com>
Co-authored-by: tangy5 <58751975+tangy5@users.noreply.github.com>
Co-authored-by: tangy5 <yuchengt@nvidia.com>
Co-authored-by: Ashis Ravindran <33703127+ASHISRAVINDRAN@users.noreply.github.com>
Co-authored-by: Alireza <ar.sedghi@gmail.com>
Co-authored-by: Thomas Kierski <54414492+ThomasKierski@users.noreply.github.com>
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