Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

86 tutorial updates #183

Merged
merged 22 commits into from
Mar 27, 2020
Merged

86 tutorial updates #183

Changes from 1 commit
Commits
Show all changes
22 commits
Select commit Hold shift + click to select a range
8fae90d
update nifti read notebook
wyli Mar 16, 2020
5fa9448
revise notebook unet_segmentation_3d.ipynb
wyli Mar 16, 2020
f7304b0
Merge branch 'master' into 86-tutorial
wyli Mar 19, 2020
87ca2a8
revise transformations
wyli Mar 22, 2020
e981575
unit testing spacing transformations
wyli Mar 24, 2020
263c14e
update docs
wyli Mar 24, 2020
4b5c105
update demo with spacing transform
wyli Mar 24, 2020
a9684e9
fixes padding mode spacing
wyli Mar 24, 2020
fa5eadf
Merge branch 'master' into 86-tutorial
wyli Mar 25, 2020
4dbd871
fixes load nifti
wyli Mar 25, 2020
f97da13
Merge branch 'master' into 86-tutorial
wyli Mar 25, 2020
a20e14d
Merge branch 'master' into 86-tutorial
wyli Mar 26, 2020
e533240
Merge branch 'master' into 86-tutorial
wyli Mar 26, 2020
85539b0
Merge branch 'master' into 86-tutorial
wyli Mar 26, 2020
6f72218
3d transform tutorial
wyli Mar 26, 2020
f736f88
update notebooks
wyli Mar 26, 2020
ec8f12c
revised spacing, load nifti for readability
wyli Mar 27, 2020
13e8343
update example readme to include 3d transforms
wyli Mar 27, 2020
0bb0285
fixes tensor contiguous in spatial transforms, fixes docs
wyli Mar 27, 2020
9e0e085
update codecov xml for all branches
wyli Mar 27, 2020
53ace57
[DLMED] update spleen notebook
Nic-Ma Mar 27, 2020
2900745
Merge branch 'master' into 86-tutorial
Nic-Ma Mar 27, 2020
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
Merge branch 'master' into 86-tutorial
  • Loading branch information
@wyli
wyli committed Mar 19, 2020
commit f7304b05bbf157e061842be9ebf20ad7f774db5f
8 changes: 5 additions & 3 deletions examples/unet_segmentation_3d.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -262,8 +262,10 @@
"outputs": [],
"source": [
"# create a training data loader\n",
"train_ds = NiftiDataset(images[:20], segs[:20], transform=train_imtrans, seg_transform=train_segtrans)\n",
"train_loader = DataLoader(train_ds, batch_size=5, num_workers=8, pin_memory=torch.cuda.is_available())\n",
"logging.basicConfig(stream=sys.stdout, level=logging.INFO)\n",
"\n",
"train_ds = NiftiDataset(images[:20], segs[:20], transform= train_imtrans, seg_transform= train_segtrans)\n",
"train_loader = DataLoader(train_ds, batch_size=5, shuffle=True, num_workers=8, pin_memory=torch.cuda.is_available())\n",
"\n",
"train_epochs = 30\n",
"state = trainer.run(train_loader, train_epochs)"
Expand Down Expand Up @@ -314,7 +316,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.5.6"
"version": "3.6.9"
}
},
"nbformat": 4,
Expand Down
You are viewing a condensed version of this merge commit. You can view the full changes here.