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Merged
Parent: Merging tags back into unstable
merged 54 commits into from
Dec 6, 2023
Merged

v0.25.0 #1231

merged 54 commits into from
Dec 6, 2023

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@jvwong
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@jvwong jvwong commented Dec 6, 2023

  • Major updates
    • article identification via CrossRef
    • Support for preprints from 'Cold Spring Harbor Laboratory', 'eLife Sciences Publications, Ltd', 'Research Square Platform LLC'
    • document/new route (aka one click add)
  • Minor
    • neo4j tests Rethinkdb database naming
    • Disable keyboard layout shortcuts

jvwong and others added 30 commits July 4, 2023 10:40
@jvwong
Merge pull request #1191 from PathwayCommons/v0.24.0
9e9fe28 
Version 0.24.0
@jvwong
Optional PubMed ID in info panel.
d5c058f
@jvwong
CrossRef API wrapper.
44bb190
@jvwong
Works and utils for prioritizing search hits from CrossRef
593cc58
@maxkfranz
Merge pull request #1196 from PathwayCommons/iss961_allow-doi-or-pubm…
a9a9395 
…edId

Explorer Info panel: Show info when article DOI (no PMID)
@maxkfranz
Merge pull request #1198 from PathwayCommons/iss961_crossref-service
bfd4334 
CrossRef API wrapper.
@jvwong
Rename modules.
e58466c
@jvwong
Merging api
b83bb18
@jvwong
Add a default publication type list field in template.
ee512dc
@jvwong
Merge pull request #1199 from PathwayCommons/iss961_PublicationTypeList
088c928 
Add PublicationTypeList to default Pubmed article template.
@jvwong
Include a PublicationType from CrossRef - fail silently.
fb99876
@jvwong
Uncomment map tests.
5c088b4
@jvwong
Renaming test harness.
04abc8a
@jvwong
Refactoring find to work with preprints.
a4c2851
@jvwong
Merge pull request #1200 from PathwayCommons/iss961_crossref-works
2878ce4 
CrossRef modules for that support search
@jvwong
disable layout via keyboard.
f31fce3
@jvwong
Merge pull request #1204 from PathwayCommons/iss1202_disable-layouts
af81c09 
Disable layout-related  keyboard shortcuts.
@jvwong
Timer helper class
3ca01de
@jvwong
Use Timer class in Doc update. Everything in milliseconds.
454ee0c
@jvwong
Reenable graphdb refresh.
7c87809
@jvwong
CRON variable documentation.
006268a
@jvwong
Merge pull request #1207 from PathwayCommons/iss1201_cron-refactor
e153a1f 
CRON update refactoring
@jvwong
Don't utilize 'score' from CrossRef.
5030a2c
@jvwong
Merge pull request #1208 from PathwayCommons/iss961_flex-top-hit
897e680 
Ignore the score when retrieving from CrossRef.
@jvwong
Format paper date using three-letter month to match Pubmed.
095bf60
@jvwong
Merge pull request #1210 from PathwayCommons/iss961_pubdate-formatting
617ca3a 
Format CrossRef month to match Pubmed
@jvwong
Create a findPreprint function to search crossref.
a64d858
@jvwong
First pass - find article in PubMed or CrossRef
d025db2
@jvwong
prototype for fillDoc article.
c84ee43
@jvwong
Retrieve latest when pubmed and crossref return items.
f0e4109
jvwong and others added 24 commits October 12, 2023 11:33
@jvwong
Extract string tests for string that look like DOIs and PMIDs
1764f31
@jvwong
Merge pull request #1212 from PathwayCommons/iss1201_extract-doi-test
a6f0a43 
Extract string tests for items that resemble DOIs and PMIDs
@jvwong
Merge branch 'unstable' into iss1201_fill-article-by-id
c97479d 
# Conflicts:
#	src/server/routes/api/document/crossref/works.js
@jvwong
Throw an articleID error or original Http status error.
eef4b32
@jvwong
Differentiate between HTTP errors and failure to find article Error.
1b2f402
@jvwong
Merge pull request #1211 from PathwayCommons/iss1201_fill-article-by-id
8b6602a 
Filling and updating Document Article metadata
@jvwong
Fix CrossRef module import casing.
d6bb869
@jvwong
Merge pull request #1214 from PathwayCommons/iss1213_import-casing
4517cb3 
Fix CrossRef module import casing.
@jvwong
Set the Document status using functions
c99a965
@jvwong
Merge pull request #1224 from PathwayCommons/iss1223_use-model-status…
226a072 
…-functions

Set the Document status using model functions
@jvwong
Create a new document route; block from crawlers
20b6c7a
@jvwong
Implement a blank document create helper
5d822e7
@jvwong
Retain information when popup closes.
9a459a2
@jvwong
Stub out correspondence to accommodate admin
d786351
@jvwong
Set temp errors on blank document so admin is aware of missing fields.
c7f2a0a
@jvwong
Merge pull request #1226 from PathwayCommons/iss1056_get-document
a2916cd 
Zero-input route to new, blank Document
@jvwong
Remove request form references.
4ae70c1
@maxkfranz
Merge pull request #1227 from PathwayCommons/iss1056_add-article-home-ez
b6c3dbd
@jvwong
Cover cases where there is a preprint, no paper ID
41d8c78
@jvwong
Always provide a Google Scholar link based on title
1ea3236
@jvwong
Merge pull request #1228 from PathwayCommons/iss1215_relPapers-preprints
5db3187 
Explorer view: Handling preprints
@jvwong
No hyphens in db name
321b5c2
@jvwong
Merge pull request #1230 from PathwayCommons/iss1229_neo4j-hyphens-co…
3b30d73 
…mplex

No hyphens in db name
@jvwong
0.25.0
196c0f3
@jvwong jvwong merged commit 0daaca2 into master Dec 6, 2023
@jvwong jvwong deleted the v0.25.0 branch March 20, 2024 15:03
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2 participants

@jvwong @maxkfranz