V1.0.0 #888
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V1.0.0 #888
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Name of database NGNC changes from "NGNC Symbol" to "NGNC"
Originally, the text is the same as searching name . For example, if searching "HGNC Symbol", the displayed text will show "HGNC Symbol". Adding displayName can customize the displayed text.
Infobox text and URI change
Infobox description more-less style changes
…client) npm module; not finished yet (fails)
…m/PathwayCommons/app-ui into issue_764_etc # Conflicts: # src/client/features/interactions/index.js
Landing box pcQuery uses incorrect parameter name
Remove call to pcFallback
Correct content-type in geneQuery
PS(other): - (interactions) queries like /pc-client/graph?source=9241 should use gene symbol instead id; - there are many errors on the sbgn views and sif like "Edge `Complex_9fb32941a08115fc12311985e436d989--to--Transport_feac0a7c834893e7b53f8f0bcfcfde40_LEFT_TO_RIGHT` has invalid endpoints and so it is impossible to draw...", which I guess are not related to changes in this branch (cytoscape.js model, dependencies?... might I am wrong.)
…into issue_764_etc
Issue 764 etc
Remove unused value from geneQuery
#761 changes to filter placement
- Fix package-lock - Remove cytoscape 'trim' - Disable layout animation on init - Use LRU in-memory cache for PC SIF queries
Update landing page links
Enrichment network style
it's a directory name in the PC archives, e.g: 'v10' or 'v9' or 'yeast1'.
…there missing... (Note, PC/Paxtools now generates shorter sbgn-ml xml IDs, easier to parse and map back to original PC biopax URIs...)
…X URIs; not done!.. Note, PC/Paxtools from now will generate shorter sbgn-ml IDs, easier to parse back to original PC URIs.
absolute BioPAX URIs are now CyJson node ids or at least prefix of those (followed by '_someMd5sum' value or '_LEFTTORIGHT' or alike); it's easy to map nodes to biopax elements now. In the future, all or most of biopax and other/summary metadata could come inside the SBGN-ML result (to be gnerated by the Paxtools java sbgn-converter and stored in Notes, Extensions elements as it was supposed to by SBGN-ML design... Looks, we soon will get rid of the graph metadata tables in the rethinkdb and additional (after sbgn data) queries for biopax properties and jsonld model!
Issue 876 and more.
# Conflicts: # README.md # src/client/common/components/base-network-view/base-network-view.js
d2fong
approved these changes
Jul 11, 2018
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The first release.
see apps.pathwaycommons.org