Merge pull request #644 from Ouranosinc/use_guthub_ci

Use GitHub CI

.github/CONTRIBUTING.rst

@@ -154,10 +154,10 @@ Before you submit a pull request, please follow these guidelines:
    Pull requests are also checked for documentation build status and for `PEP8`_ compliance.
 
    The build statuses and build errors for pull requests can be found at:
-    https://travis-ci.com/Ouranosinc/xclim/pull_requests
+    https://github.com/Ouranosinc/xclim/actions
 
 .. warning::
-    PEP8, Black, Pytest (with xdoctest) and Pydocstyle (for numpy docstrings) conventions are strongly enforced.
+    PEP8, Black, pytest (with xdoctest) and pydocstyle (for numpy docstrings) conventions are strongly enforced.
     Ensure that your changes pass all tests prior to pushing your final commits to your branch.
     Code formatting errors are treated as build errors and will block your pull request from being accepted.
 

.github/workflows/main.yml

@@ -0,0 +1,94 @@
+name: xclim
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+
+jobs:
+  black:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        tox-env: [black]
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.6
+      - name: Install tox
+        run: pip install tox
+      - name: Run linting suite
+        run: tox -e ${{ matrix.tox-env }}
+
+  doctests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        tox-env: [doctests]
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.6
+      - name: Install tox
+        run: pip install tox
+      - name: Run lint
+        run: tox -e ${{ matrix.tox-env }}
+
+  test:
+    needs: black
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        tox-env: [py37-xarray, py38-slow]
+        python-version: [3.7, 3.8]
+        exclude:
+          - tox-env: py37-xarray
+            python-version: 3.8
+          - tox-env: py38-slow
+            python-version: 3.7
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install tox
+      run: pip install tox
+    - name: Test with tox
+      run: tox -e ${{ matrix.tox-env }}
+
+#  docs:
+#    needs: test
+#    runs-on: ubuntu-latest
+#    steps:
+#      - uses: actions/checkout@v2
+#      - name: Install packages
+#        run: |
+#          sudo apt-get -y install pandoc
+#      - uses: actions/setup-python@v2
+#        with:
+#          python-version: 3.6
+#      - name: Install tox
+#        run: pip install tox
+#      - name: make docs
+#        run: tox -e docs
+
+#    - name: Coveralls
+#      uses: coverallsapp/github-action@master
+#      with:
+#        github-token: ${{ secrets.GITHUB_TOKEN }}
+#        flag-name: run-${{ matrix.python-version }}
+#        parallel: true
+
+#  finish:
+#    needs: test
+#    runs-on: ubuntu-latest
+#    steps:
+#    - name: Coveralls Finished
+#      uses: coverallsapp/github-action@master
+#      with:
+#        github-token: ${{ secrets.github_token }}
+#        parallel-finished: true

.gitignore

@@ -110,6 +110,7 @@ ENV/
 # autogenerated RestructuredText
 /docs/modules.rst
 /docs/xclim.core.rst
+/docs/xclim.ensembles.rst
 /docs/xclim.indicators.atmos.rst
 /docs/xclim.indicators.land.rst
 /docs/xclim.indicators.rst
@@ -119,3 +120,5 @@ ENV/
 /docs/xclim.rst
 /docs/xclim.sdba.rst
 /docs/xclim.testing.rst
+/docs/xclim.testing.tests.rst
+/docs/xclim.testing.tests.test_sdba.rst

.travis.yml

@@ -1,16 +1,16 @@
-language: python
-
-os: linux
-dist: xenial
-
-branches:
-  only:
-    - master
-    - ^v[0-9]+\.[0-9]+[\.]?[a-c-]?[0-9]?[\w-]+\b
-
-jobs:
-  fast_finish: true
-  include:
+#language: python
+#
+#os: linux
+#dist: xenial
+#
+#branches:
+#  only:
+#    - master
+#    - ^v[0-9]+\.[0-9]+[\.]?[a-c-]?[0-9]?[\w-]+\b
+#
+#jobs:
+#  fast_finish: true
+#  include:
 #    - env:
 #        - TOXENV=docs
 #      name: "Documentation"
@@ -19,15 +19,15 @@ jobs:
 #        apt:
 #          packages:
 #            - pandoc
-    - env: TOXENV=black
-      name: "Black, Flake8, Numpy-like Docstring compliance, and linting"
-      python: 3.6
+#    - env: TOXENV=black
+#      name: "Black, Flake8, Numpy-like Docstring compliance, and linting"
+#      python: 3.6
 #    - env: TOXENV=py39
 #      name: "Python3.9 (Linux)"
 #      python: 3.9
-    - env: TOXENV=py38-doctest
-      name: "Python3.8 (Linux) + doctests"
-      python: 3.8
+#    - env: TOXENV=py38-doctest
+#      name: "Python3.8 (Linux) + doctests"
+#      python: 3.8
 #    - if: type = push
 #      env: TOXENV=macOS
 #      name: "Python3.x (macOS)"
@@ -48,9 +48,9 @@ jobs:
 #    - env: TOXENV=py37
 #      name: "Python3.7 (Linux)"
 #      python: 3.7
-    - env: TOXENV=py36-nosubset-lm3
-      name: "Python3.6 (Linux + lmoments3@master) (no subsetting)"
-      python: 3.6
+#    - env: TOXENV=py36-nosubset-lm3
+#      name: "Python3.6 (Linux + lmoments3@master) (no subsetting)"
+#      python: 3.6
 #    - if: type = push
 #      env: TOXENV=py36-xarray
 #      name: "Python3.6 (Linux + xarray@master + cftime@master)"
@@ -59,87 +59,87 @@ jobs:
 #      env: TOXENV=py36-bottleneck
 #      name: "Python3.6 (Linux + bottleneck@master)"
 #      python: 3.6
-    - if: type = push
-      env: TOXENV=py38-anaconda
-      name: "Python3.8 (Linux + Anaconda)"
-      python: 3.8
-      before_install:
-          - printenv
-          - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
-          - bash miniconda.sh -b -p $HOME/miniconda
-          - export PATH="$HOME/miniconda/bin:$PATH"
-          - hash -r
-          - conda config --set always_yes yes --set changeps1 no
-          - conda install setuptools
-          - conda update -q conda
-          - conda create -n xclim -c conda-forge python=$TRAVIS_PYTHON_VERSION
-          - source activate xclim
-          - conda env update -f environment.yml
-          - conda install -c conda-forge pytest coveralls pytest-cov xdoctest
-      install:
-          - conda install pip
-          - pip install -e .[dev]
-      script:
-          - py.test --cov=xclim
-    - if: type = push
-      env:
-        - TOXENV=py37-windows
-        - DESIRED_PYTHON=3.7
-        - MINICONDA_PATH=$(cygpath --windows /c/miniconda)
-      name: "Python3.7 (Windows + Anaconda via Chocolatey)"
-      os: windows
-      language: shell
-      before_install:
-        - printenv
-        - choco install miniconda3 --params="'/AddToPath:0 /D:$MINICONDA_PATH'"
-        - source /c/miniconda/Scripts/activate
-        - hash -r
-        - conda config --set always_yes yes --set changeps1 no
-        - conda install setuptools
-        - conda update -q conda
-        - conda create -n xclim -c conda-forge python=$DESIRED_PYTHON
-        - source activate xclim
-        - sed -i -e 's/clisops>=0.4.0/clisops<0.4.0/g' environment.yml # clisops >0.4.0 not supported for Windows
-        - conda env update -f environment.yml
-        - conda install -c conda-forge pytest coveralls pytest-cov xdoctest
-      install:
-        - conda install pip
-        - pip install -e .[dev]
-      script:
-        - py.test --cov=xclim
-  allow_failures:
-    - env: TOXENV=py38-doctest
-    - env: TOXENV=py38-anaconda
+#    - if: type = push
+#      env: TOXENV=py38-anaconda
+#      name: "Python3.8 (Linux + Anaconda)"
+#      python: 3.8
+#      before_install:
+#          - printenv
+#          - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
+#          - bash miniconda.sh -b -p $HOME/miniconda
+#          - export PATH="$HOME/miniconda/bin:$PATH"
+#          - hash -r
+#          - conda config --set always_yes yes --set changeps1 no
+#          - conda install setuptools
+#          - conda update -q conda
+#          - conda create -n xclim -c conda-forge python=$TRAVIS_PYTHON_VERSION
+#          - source activate xclim
+#          - conda env update -f environment.yml
+#          - conda install -c conda-forge pytest coveralls pytest-cov xdoctest
+#      install:
+#          - conda install pip
+#          - pip install -e .[dev]
+#      script:
+#          - py.test --cov=xclim
+#    - if: type = push
+#      env:
+#        - TOXENV=py37-windows
+#        - DESIRED_PYTHON=3.7
+#        - MINICONDA_PATH=$(cygpath --windows /c/miniconda)
+#      name: "Python3.7 (Windows + Anaconda via Chocolatey)"
+#      os: windows
+#      language: shell
+#      before_install:
+#        - printenv
+#        - choco install miniconda3 --params="'/AddToPath:0 /D:$MINICONDA_PATH'"
+#        - source /c/miniconda/Scripts/activate
+#        - hash -r
+#        - conda config --set always_yes yes --set changeps1 no
+#        - conda install setuptools
+#        - conda update -q conda
+#        - conda create -n xclim -c conda-forge python=$DESIRED_PYTHON
+#        - source activate xclim
+#        - sed -i -e 's/clisops>=0.4.0/clisops<0.4.0/g' environment.yml # clisops >0.4.0 not supported for Windows
+#        - conda env update -f environment.yml
+#        - conda install -c conda-forge pytest coveralls pytest-cov xdoctest
+#      install:
+#        - conda install pip
+#        - pip install -e .[dev]
+#      script:
+#        - py.test --cov=xclim
+#  allow_failures:
+#    - env: TOXENV=py38-doctest
+#    - env: TOXENV=py38-anaconda
 #    - env: TOXENV=macOS
-    - env:
-      - TOXENV=py37-windows
-      - DESIRED_PYTHON=3.7
-      - MINICONDA_PATH=$(cygpath --windows /c/miniconda)
+#    - env:
+#      - TOXENV=py37-windows
+#      - DESIRED_PYTHON=3.7
+#      - MINICONDA_PATH=$(cygpath --windows /c/miniconda)
 #    - env: TOXENV=py36-xarray
 #    - env: TOXENV=py36-bottleneck
-
-before_install:
-    - printenv
-    - pip install --upgrade pip setuptools
-
-install:
-    - pip install -U tox-travis
-
-script: tox -e $TOXENV
-
-before_deploy:
-    - echo "$TRAVIS_TAG" "$TRAVIS_COMMIT"
-
-deploy:
-  skip_existing: true
-  provider: pypi
-  distributions: sdist bdist_wheel
-  username: Zeitsperre
-  password:
-    secure: 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
-  on:
-    tags: true
-    all_branches: true
-    condition: $TRAVIS_TAG =~ ^v[0-9]+\.[0-9]+[\.]?[a-c-]?[0-9]?[\w-]+\b
-    repo: Ouranosinc/xclim
-    python: 3.7
+#
+#before_install:
+#    - printenv
+#    - pip install --upgrade pip setuptools
+#
+#install:
+#    - pip install -U tox-travis
+#
+#script: tox -e $TOXENV
+#
+#before_deploy:
+#    - echo "$TRAVIS_TAG" "$TRAVIS_COMMIT"
+#
+#deploy:
+#  skip_existing: true
+#  provider: pypi
+#  distributions: sdist bdist_wheel
+#  username: Zeitsperre
+#  password:
+#    secure: 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
+#  on:
+#    tags: true
+#    all_branches: true
+#    condition: $TRAVIS_TAG =~ ^v[0-9]+\.[0-9]+[\.]?[a-c-]?[0-9]?[\w-]+\b
+#    repo: Ouranosinc/xclim
+#    python: 3.7

HISTORY.rst

@@ -19,6 +19,7 @@ Internal changes
 * modified `xclim.core.calendar.percentile_doy` to improve performance
 * new `xclim.core.calendar.compare_offsets` for comparing offset strings
 * new `xclim.indices.generic.get_op` to retrieve a function from a string representation of that operator.
+* The CI pipeline has been migrated from Travis CI to GitHub Actions. All stages are still built using `tox`.
 
 
 0.23.0 (2021-01-22)

README.rst

@@ -58,9 +58,8 @@ This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypack
         :target: https://gitter.im/Ouranosinc/xclim?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge
         :alt: Gitter Chat
 
-
-.. |build| image:: https://img.shields.io/travis/Ouranosinc/xclim.svg
-        :target: https://travis-ci.com/Ouranosinc/xclim
+.. |build| image:: https://github.com/Ouranosinc/xclim/workflows/xclim/badge.svg
+        :target: https://github.com/Ouranosinc/xclim/actions
         :alt: Build Status
 
 .. |coveralls| image:: https://coveralls.io/repos/github/Ouranosinc/xclim/badge.svg

requirements_dev.txt

@@ -8,9 +8,10 @@ tox
 coverage
 twine
 pytest
+pytest-cov
 pytest-runner
 pylint
 xdoctest
-pydocstyle
+pydocstyle>=5.1.1
 nbval
 pre-commit>=2.9