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@IAlibay IAlibay commented Sep 29, 2025

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codecov bot commented Sep 29, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 93.19%. Comparing base (9987706) to head (db5b2ae).
⚠️ Report is 2 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1542      +/-   ##
==========================================
- Coverage   95.23%   93.19%   -2.05%     
==========================================
  Files         172      172              
  Lines       14454    14469      +15     
==========================================
- Hits        13765    13484     -281     
- Misses        689      985     +296     
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fast-tests 93.19% <ø> (?)
slow-tests ?

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@IAlibay IAlibay merged commit 4344268 into main Sep 29, 2025
12 of 13 checks passed
@IAlibay IAlibay deleted the pin-numpy-2.3 branch September 29, 2025 11:55
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No API break detected ✅

atravitz pushed a commit that referenced this pull request Sep 29, 2025
atravitz added a commit that referenced this pull request Oct 7, 2025
* update partial charge tests now that a production NAGL model is available (#1506)

* update tests now that a production NAGL model is available

* fix mock

* clean up mocking

* add nagl test news item

* debug slow python 3.13 tests (#1468)

* Turn off minimization when we do a dry run
---------

Co-authored-by: IAlibay <IAlibay@users.noreply.github.com>

* update quickrun execution docs and add MPS link (#1483)

* add jq cookbook (#1488)

* add jq code blocks

* use tutorial data

* news

* debug docs build (#1489)

* don't build openmm

* mambaforge->miniconda for rtd

* artifically small build for debugging

* dont build env

* just build python

* add channels

* add sphinx packages to env

* add all non-openfe-ecosystem deps

* remove shim channel

* add openfe package

* add everything except openmm and toolkit

* add openmm

* add openff-toolkit

* only openff-toolkit

* try openff-toolkit-base

* try latest openff

* everybody back in

* build without openmm

* build with openff-toolkit-base

* bump rtd

* add pip build

* remove any openff-toolkit

* build w/o openmm

* add pip install

* build everything without pip install

* try no deps

* try custom build

* only python and pip

* try openfe-toolkit-base

* add temp deps for build with openff-toolkit-base

* add temp deps for build with openff-toolkit-base

* mock imports

* dont mock with toolkit base

* bump toolkit version

* Revert "bump toolkit version"

This reverts commit 6e3108a.

* add mocks

* try pinnint to toolkit-base 0.13.0, no mocks

* back to >= 0.13.0 toolkit to make sure it wasn't a fluke

* mock imports

* add pipe example for jq (#1505)

* add pipe example for jq

* pin to docutil 0.20

* try to avoid memory error

* debug rtd build memory error (#1510)

* try mambaforge build

* Revert "try mambaforge build"

This reverts commit 683e07f.

* try explicit build

* try removing ambertools

* use the right env

* just add gufe pip install back

* add back openfe eco packages

* mock py3dmol

* add note for pip installs

* fix quote

* temporarily resort to SettingsBaseModel to get build

* specific imports

* dont use base settings placeholder

* temp pin numpy (#1542)

* Removing unnecessary limit on resids (#1539)

* Removing unnecessary limit on resids indices gathering

* Updated CHANGELOG for 1.6.1

* add summary

* update docs theme (#1545)

* adding new branding assets

* remove images

* update theme branch

* CantinaPurple accent

* lowercase convention

* updating text

* remove dark mode for now

* fix sidebars

* fix formatting

* capitalization

* don't break spaces

* bump ci

* favicon!

* whitespace :(

* pin to sphinx release

* pin to gufe 1.6.1

* move env info before test imports

* bump single file installer to 3.12.11 to match colab

---------

Co-authored-by: IAlibay <IAlibay@users.noreply.github.com>
Co-authored-by: Iván Pulido <2949729+ijpulidos@users.noreply.github.com>
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3 participants