Merge master into feature-hamocc_beyond-CMIP6 branch #226
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* Initial restructuring of sediment-related tracer declaration and initialization * Introducing mapping function * Remove unncessary comments * Fixed diagnostics bug and updated index naming
Introducing a static 3D sediment porosity field that can be optionally read in with effects on molecular pore water diffusion and shifting.
…sedbypass=true` (NorESMhub#198) * Removing bodensed - Initialization of sediment parameters and fields now in mo_sedmnt
Make the surface mixed layer depth fractional index `hOBL` available for use in iHAMOCC, and adjust the internal iHAMOCC index `kmle` according to `hOBL`. Default value `kmle = 2` is retained for consistency with isopycnic coordinates.
Support for NUOPC driver
* Fixing the reading of variable porosity input field in preparation for the NorESM 2.0.6 release Cherry-picked from private Ncycleprivate branch 0d56930e2fdd62caba964d375b57304942568926 * Provide number of layers (3rd dim) via ks and not hard-coded * minor clean-up
…ions (default off).
Correct unit of diagnostic field and make conservation and checksum diagnostics selectable by namelist options
* add pCO2m (moist), CO2 piston velocity and solubility output - caution: kwco2 piston velocity now really holds only piston velocity (and not times solubility)
* Add variables used by PNETCDF to explicit use staements. * Move implicit none statments * update explicit use statement for pnetcdf
Fixed sediment clay units.
JorgSchwinger
approved these changes
Jan 25, 2023
TomasTorsvik
approved these changes
Jan 25, 2023
|
Ok, I felt so free to also include the last merge of @TomasTorsvik into this merge, since it was a really minor change. |
jmaerz
added a commit
to jmaerz/BLOM
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this pull request
Aug 9, 2023
* Dynamic mapping of pore water tracers to ocean tracers (NorESMhub#192) * Initial restructuring of sediment-related tracer declaration and initialization * Introducing mapping function * Remove unncessary comments * Fixed diagnostics bug and updated index naming * Added initial support for NUOPC driver. * Lon-lat variable sediment porosity (NorESMhub#189) Introducing a static 3D sediment porosity field that can be optionally read in with effects on molecular pore water diffusion and shifting. * Added wave forcing fields. * Renamed folder for MCT driver. * Moved MCT specific file from drivers/cpl_share/ to drivers/mct/. * Rename drivers/mct/mod_swtfrz.F to drivers/mct/mod_swtfrz.F90. * Rewrite to drivers/mct/mod_swtfrz.F90 to free format Fortran. * Remove redundant definition of kOBL. * Redefine kOBL, cast as integer * Fixing variable sediment porosity - field initialization in case of `sedbypass=true` (NorESMhub#198) * Removing bodensed - Initialization of sediment parameters and fields now in mo_sedmnt * Hamocc hybrid coord2 (NorESMhub#179) Make the surface mixed layer depth fractional index `hOBL` available for use in iHAMOCC, and adjust the internal iHAMOCC index `kmle` according to `hOBL`. Default value `kmle = 2` is retained for consistency with isopycnic coordinates. * Fix porosity read (NorESMhub#201) * Fixing the reading of variable porosity input field in preparation for the NorESM 2.0.6 release Cherry-picked from private Ncycleprivate branch 0d56930e2fdd62caba964d375b57304942568926 * Provide number of layers (3rd dim) via ks and not hard-coded * minor clean-up * Correct unit of diagnostic variable dp_trc. * Made conservation and checksum diagnostics selectable by namelist options (default off). * pCO2, Piston velocity and solubility output (NorESMhub#202) * add pCO2m (moist), CO2 piston velocity and solubility output - caution: kwco2 piston velocity now really holds only piston velocity (and not times solubility) * Bugfix pnetcdf (NorESMhub#208) * Add variables used by PNETCDF to explicit use staements. * Move implicit none statments * update explicit use statement for pnetcdf * fixed units and renamed calcium burial to CaCO3 burial (NorESMhub#212) Fixed sediment clay units. * Add option for surface pH output (NorESMhub#221) * Remove unused parameters in wrt* subroutine calls in ncout_hamocc.F90 * Import get_bgc_namelist only in subroutine where it is needed. (NorESMhub#225) Co-authored-by: Mats Bentsen <mben@norceresearch.no> Co-authored-by: Tomas Torsvik <tomas.torsvik.work@gmail.com> Co-authored-by: Tomas Torsvik <43031053+TomasTorsvik@users.noreply.github.com> Co-authored-by: Jörg Schwinger <jorg.schwinger@norceresearch.no>
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I branched off from
feature-hamocc_beyond-CMIP6and merged the currentmasterinto it to enable easier merging back to and to updatefeature-hamocc_beyond-CMiP6. So essentially doing a merge of the recentmasterintofeature-hamocc_beyond-CMIP6branch (while dealing locally with conflicts).I was already asking Tomas about it, but maybe we can think about discontinue the feature branch by merging it soon back to
master.