feat: JSON model representation

[mhovd]

For keeping a backup of the contributions by @Siel

[github-actions]

Bencher Report

Branch	json-backup
Testbed	mhovd-pgx

Click to view all benchmark results

Benchmark	Latency	Benchmark Result nanoseconds (ns) (Result Δ%)	Upper Boundary nanoseconds (ns) (Limit %)
Analytical vs ODE/One-compartment IV/Analytical	📈 view plot 🚷 view threshold	829.52 ns (-2.82%) Baseline: 853.58 ns	986.54 ns (84.08%)
Analytical vs ODE/One-compartment IV/ODE	📈 view plot 🚷 view threshold	17,843.00 ns (+0.54%) Baseline: 17,747.50 ns	18,199.00 ns (98.04%)
Analytical vs ODE/One-compartment oral/Analytical	📈 view plot 🚷 view threshold	851.61 ns (-0.13%) Baseline: 852.75 ns	1,025.81 ns (83.02%)
Analytical vs ODE/One-compartment oral/ODE	📈 view plot 🚷 view threshold	25,665.00 ns (-0.45%) Baseline: 25,781.00 ns	26,394.78 ns (97.24%)
Analytical vs ODE/Two-compartment IV/Analytical	📈 view plot 🚷 view threshold	879.91 ns (-5.14%) Baseline: 927.55 ns	1,094.34 ns (80.41%)
Analytical vs ODE/Two-compartment IV/ODE	📈 view plot 🚷 view threshold	26,097.00 ns (-0.50%) Baseline: 26,229.25 ns	26,747.11 ns (97.57%)
Analytical vs ODE/Two-compartment oral/Analytical	📈 view plot 🚷 view threshold	949.03 ns (-3.09%) Baseline: 979.30 ns	1,170.35 ns (81.09%)
Analytical vs ODE/Two-compartment oral/ODE	📈 view plot 🚷 view threshold	29,277.00 ns (-0.20%) Baseline: 29,336.00 ns	30,340.11 ns (96.50%)
Conditional dose modification	📈 view plot 🚷 view threshold	1,174.90 ns (-1.30%) Baseline: 1,190.33 ns	1,236.97 ns (94.98%)
Create large dataset (100 subjects)	📈 view plot 🚷 view threshold	55,202.00 ns (+1.96%) Baseline: 54,142.75 ns	56,979.68 ns (96.88%)
Data expand complex (1h intervals)	📈 view plot 🚷 view threshold	27,865.00 ns (+1.08%) Baseline: 27,567.75 ns	29,432.86 ns (94.67%)
Data expand simple (1h intervals)	📈 view plot 🚷 view threshold	487.01 ns (0.00%) Baseline: 487.01 ns	503.01 ns (96.82%)
Data expand with additional time	📈 view plot 🚷 view threshold	37,458.00 ns (-1.30%) Baseline: 37,951.75 ns	40,332.92 ns (92.87%)
Filter exclude subjects	📈 view plot 🚷 view threshold	30,986.00 ns (-0.29%) Baseline: 31,076.75 ns	31,569.82 ns (98.15%)
Filter include subjects	📈 view plot 🚷 view threshold	7,952.90 ns (+0.01%) Baseline: 7,952.22 ns	8,359.95 ns (95.13%)
Modify all bolus doses	📈 view plot 🚷 view threshold	1,161.20 ns (-0.14%) Baseline: 1,162.80 ns	1,171.33 ns (99.14%)
Modify all infusion doses	📈 view plot 🚷 view threshold	1,200.40 ns (-0.54%) Baseline: 1,206.90 ns	1,255.54 ns (95.61%)
SubjectBuilder multi-occasion	📈 view plot 🚷 view threshold	270.44 ns (+2.66%) Baseline: 263.43 ns	281.93 ns (95.92%)
SubjectBuilder simple	📈 view plot 🚷 view threshold	103.48 ns (+0.01%) Baseline: 103.47 ns	104.72 ns (98.81%)
SubjectBuilder with covariates	📈 view plot 🚷 view threshold	276.86 ns (+1.72%) Baseline: 272.19 ns	284.70 ns (97.25%)
nca_auc_cmax_metrics	📈 view plot 🚷 view threshold	609.91 ns
nca_lambda_z_candidates	📈 view plot 🚷 view threshold	633.44 ns
nca_population/10	📈 view plot 🚷 view threshold	45,813.00 ns
nca_population/100	📈 view plot 🚷 view threshold	140,040.00 ns
nca_population/500	📈 view plot 🚷 view threshold	315,210.00 ns
nca_single_subject	📈 view plot 🚷 view threshold	1,018.00 ns
one_compartment	📈 view plot 🚷 view threshold	19,765.00 ns (+0.22%) Baseline: 19,722.25 ns	20,236.85 ns (97.67%)
one_compartment_covariates	📈 view plot 🚷 view threshold	26,684.00 ns (+0.98%) Baseline: 26,425.00 ns	28,757.82 ns (92.79%)
readme 20	📈 view plot 🚷 view threshold	303,350.00 ns (-0.57%) Baseline: 305,080.00 ns	324,219.83 ns (93.56%)
two_compartment	📈 view plot 🚷 view threshold	22,952.00 ns (+3.78%) Baseline: 22,116.75 ns	24,344.87 ns (94.28%)

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