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Issues list

Track memory usage during build enhancement New feature or request
#454 opened Apr 12, 2022 by caufieldjh
in Sankey plot/dashboard transform node and edge category counts to log scale enhancement New feature or request
#397 opened Feb 17, 2021 by realmarcin
Consider moving curated GPI file to our data repo enhancement New feature or request
#371 opened Oct 8, 2020 by justaddcoffee
1
Add function in directory-indexer.py to add existing build enhancement New feature or request
#359 opened Sep 28, 2020 by justaddcoffee
KG-COVID-19 prediction evaluation dashboard by method enhancement New feature or request
#344 opened Sep 23, 2020 by realmarcin
downloadable files for KG-COVID-19 graph test/training sets enhancement New feature or request
#343 opened Sep 23, 2020 by realmarcin
Ingests that use symmetric edge_labels (like interacts_with) should assert edge in both directions bug Something isn't working enhancement New feature or request
#328 opened Sep 3, 2020 by justaddcoffee
1
Add a query for druggable 2nd order interactors that filters interactions by STRING combined_score enhancement New feature or request
#296 opened Jul 24, 2020 by justaddcoffee
@justaddcoffee @wdduncan @lpalbou
10
Create system for checking graph schema, starting with TTD (one of our simpler ingest) documentation Improvements or additions to documentation enhancement New feature or request
#286 opened Jul 14, 2020 by justaddcoffee
1 of 2 tasks
@justaddcoffee @matentzn
2
Use named graphs by source for triplestore deployment? enhancement New feature or request
#282 opened Jul 9, 2020 by matentzn
Run SPARQL queries in queries/sparql/ using blazegraph-runner enhancement New feature or request
#270 opened Jul 6, 2020 by justaddcoffee
Use bl toolkit to rather than hardcode strings for things like node/edge headers enhancement New feature or request
#239 opened Jun 18, 2020 by justaddcoffee
Add a SPARQL query for human genes that regulate human proteins that interact with SARS-CoV-2 proteins enhancement New feature or request
#230 opened Jun 15, 2020 by justaddcoffee
@matentzn
7
is there a way to track the .tsv and .nt file downloads? download count at least would be key... enhancement New feature or request
#208 opened Jun 4, 2020 by realmarcin
Ingest updated version of Drug Central enhancement New feature or request
#197 opened Jun 1, 2020 by justaddcoffee
Human phenotype nodes from HPO should be labeled as biolink:PhenotypicFeature enhancement New feature or request
#195 opened May 29, 2020 by justaddcoffee
edge file TSV missing publications ids (PMIDs) provenance enhancement New feature or request
#190 opened May 28, 2020 by TriageDr
3
Should have a standard naming convention for the graphs enhancement New feature or request
#161 opened May 18, 2020 by justaddcoffee
refactor run.py download so data/raw contains only successful downloads (no partials) enhancement New feature or request
#148 opened May 12, 2020 by justaddcoffee
Load TSV files into neo4j instance enhancement New feature or request wontfix This will not be worked on
#133 opened May 4, 2020 by justaddcoffee
10
create n-triples w/o lables enhancement New feature or request
#126 opened May 4, 2020 by wdduncan
@deepakunni3
Ingest "drug use" from Drug Central enhancement New feature or request new data source new data source we'd like to ingest
#116 opened Apr 30, 2020 by justaddcoffee
Ingest improved HPO/GO/MONDO ontologies from Nico's post-processed TSVs enhancement New feature or request new data source new data source we'd like to ingest
#101 opened Apr 17, 2020 by justaddcoffee
1
Develop a way to deal with time series data enhancement New feature or request
#92 opened Apr 10, 2020 by justaddcoffee
1
Align with UCSD Peter Rose's KG enhancement New feature or request
#78 opened Apr 9, 2020 by justaddcoffee
5
ProTip! Updated in the last three days: updated:>2024-11-01.