edge file TSV missing publications ids (PMIDs) provenance

[TriageDr]

I noted just from a quick peek at the publications column (number 21 I think), that the file returned no publications for any of the edges - is this correct? command line code I used was awk '{print $21}' merged-kg_edges.tsv

[justaddcoffee]

Thanks @TriageDr - we'll have a look

[justaddcoffee]

I can't reproduce this - I see entries in the publication column in the most recent build:

 wget kg-hub.berkeleybop.io/kg-covid-19.tar.gz
(venv) ~/ *master $ cut -f 21 merged-kg_edges.tsv | head -1
publication
(venv) ~/ *master $ cut -f 21 merged-kg_edges.tsv | sort | uniq | grep -c '' 
82
(venv) ~/ *master $ cut -f 21 merged-kg_edges.tsv | sort | uniq

PMID:10969042
PMID:11815627
PMID:14647384
PMID:15094372
PMID:15479853
PMID:15688292
PMID:15791205

There are only 82 unique values in this column, which I think is because only a few transform emit this info (IntAct)...

[justaddcoffee]

@TriageDr adding - if there are ingests for which publication info is particularly important, we can make a ticket to add this info ASAP