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The Harvard-ACMG Knowledge Base contains information about getting started with local computational resources. We hope that new Harvard-ACMG members will find this information useful.
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Group FAQs. In this document, Daniel and Loretta answer questions about everything including work expectations, remote work policies, and more. This document is password protected; for the password, you can message Drew Pendergrass or Bob Yantosca. It is the same password as for the group meeting Zoom, all lowercase.
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Getting started on the FASRC Cannon cluster
- What to know about the 2023 OS update to RockyLinux
- Set up SSH keys for accessing Cannon and other remote machines
- Install configuration files from our
cannon-env
repository - Load software packages into your Cannon login environment
- List of local resources on Cannon (partitions & storage)
- Cannon cluster etiquette
- Know how to prevent RSI injury
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Using the Slurm scheduler to submit jobs on Cannon
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Resources for modeling and data analysis
- Linux, bash, and Git (The big three!)
- AWS cloud
- Programming languages
- Machine learning and data assimilation
- Inverse modeling and methods
- Introduction to Python, NumPy, SciPy, and more
- Tutorial on plotting in Python (three mapping packages, subplots, and more)
- Viewing and editing netCDF files
- Transferring data from Cannon to/from Google Drive with rclone
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Harvard-ACMG local resources
- View the specialties of Harvard-ACMG group members (and add your specialties here!)
- Transfer files to and from Cannon with Globus
- Access local printers
- Subscribe to email lists
- Book the Jacob-group conference Room (P110E)
- Book a classroom in SEAS
- Update content on the group website
- Add new links to external documents on this wiki
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Education materials for mentoring undergraduates
Please use the Harvard-ACMG issue tracker to report any typos or outdated content. We strive to keep this information as current as possible.