problem in installing 2.8.0 on ubuntu 22.04

[lfaino]

Dear @nathandunn

I have a problem. I installed Apollo 2.8 using docker and after some debug i made it work.

However i still have an issue.

I currently have a folder called genomes in which I have multiple folders that represent single instance of genomes. in each of these folders, i have a data folder. To be more explicit:

genomes/:
genome1/:
data/:
trackList.json
seq/
genome2/:
data/
trackList.json
seq/
genome2/:
data/
trackList.json
seq/
genome2/:
data/
trackList.json
seq/

I have bind the genomes folder to data folder in docker (-v /genomes/:/data/) and it works. I can use /data/genomes/genome1/data/ to load a single genome.

however, i can not see tracks for any of the genomes although there are trackList.json in each data folder.

If i read the docker-apollo-config.groovy, i see that it is hard coded that the jbrowse data are located at the "/data/temporary/apollo_data" and this is not going to work for me.

how can i make as WEBAPOLLO_COMMON_DATA the path that i use in the directory field when i "add a new organism" and not the hard coded path?

I hope i was clear

thanks
L