Update our master branch with runtime profiling and nipype re-base #8
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…se_current_prov * origin/fix/use_current_prov: fix: changing commit format to support py3
…se_current_prov * origin/fix/use_current_prov: fix: string decoding for prov literal and few pipeline job submission info statements
Fix: ANTs cleanup
* upstream/master: fix: ensure that T2 file gets used to clean surface
fix: absolute to relative imports
Correct versions and consistency in install.rst
[FIX] Created TVTKBaseInterface. Should fix nipy#1218
Previously, S3DataGrabber checked if outputs were lists or strings, and changed them in those cases. However, if output was a unicode, then it went unchanged. That's clearly not what we want, so we now change in all cases: iterating through all values of output if it has __iter__ attribute (is list-like), and using the value as the path if it doesn't.
The invert_initial_moving_transform variable in RegistrationInputSpec needs usedefault=True to fix "TypeError: int() argument must be a string or a number, not '_Undefined'". This occurred in line 817 "do_invert_transform = int(self.inputs.invert_initial_moving_transform)".
* upstream/master: Correct versions and consistency in install.rst fix:import utils needed one more dot fix: absolute to relative imports add vtk version checking in fsl interfaces update CHANGES Fix nipy#1218 only, not addressing nipy#973 force setting ETS_TOOLKIT before tvtk nipy#972 Created TVTKBaseInterface. Should fix nipy#1218
…se_current_prov * origin/fix/use_current_prov: fix: use text_type on str for exceptions
…sity [ENH] Improved nosetest information
… of dying processes
DataSink S3 support
run check-before-commit
improved outputs of circeci
…ad of complete plugin_args dict
Re-basing code with nipype master branch
…e loop in memory_profiler was executing node twice when it didnt finish running the first time
pintohutch
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Feb 12, 2016
Update our master branch with runtime profiling and nipype re-base
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