GA4GHTT-261 - changes for CN, SVLEN, SVCLAIM #246
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A few of the 'should' cases were considered as 'must' and generated errors. They are now moved as optional checks to make warnings instead of errors. |
Co-authored-by: April Shen <april.tuesday@gmail.com>
tcezard
approved these changes
Jun 12, 2024
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4.4 updated, CN, SVLEN type change, SVCLAIM added.
Mandatory field check added, to deal with specific structural variants
BND removed from valid allele set
Tests and test files updated.
Assembler, debuggulator yet to update.
(The draft PR made earlier left as it is for reference as more validations are made)