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feat: update header to match new portal learn section (#4323) #4324

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merged 1 commit into from
Jan 6, 2025
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feat: update header to match new portal learn section (#4323) #4324

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273 changes: 0 additions & 273 deletions site-config/anvil-catalog/dev/layout/header/navigation/navigationItem/learn.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -4,278 +4,5 @@ const LEARN_URL = "{portalUrl}{learn}";

export const LEARN: NavLinkItem = {
label: "Learn",
menuItems: [
{
label: "Introduction",
menuItems: [
{ label: "Introduction", url: "" },
{
label: "Getting Started",
url: LEARN_URL,
},
{
label: "Guides and Tutorials",
url: `${LEARN_URL}/introduction/guides-and-tutorials`,
},
{
label: "Introduction to Terra",
url: `${LEARN_URL}/introduction/intro-to-terra`,
},
{
label: "Introduction to Dockstore",
url: `${LEARN_URL}/introduction/intro-to-dockstore`,
},
{
label: "Understanding Cloud Costs",
url: `${LEARN_URL}/introduction/understanding-cloud-costs`,
},
{ label: "Account Setup", url: "" },
{
label: "Overview of Account Setup",
url: `${LEARN_URL}/account-setup/overview-of-account-setup`,
},
{
label: "Obtaining a Google ID",
url: `${LEARN_URL}/account-setup/obtaining-a-google-id`,
},
{
label: "Creating a Terra Account",
url: `${LEARN_URL}/account-setup/creating-a-terra-account`,
},
{ label: "Billing Setup", url: "" },
{
label: "Overview of Billing Concepts",
url: `${LEARN_URL}/billing-setup/billing-concepts`,
},
{
label: "Creating a Google Cloud Billing Account",
url: `${LEARN_URL}/billing-setup/creating-a-google-cloud-billing-account`,
},
{ label: "Accessing Data", url: "" },
{
label: "Discovering Data",
url: `${LEARN_URL}/accessing-data/discovering-data`,
},
{
label: "Requesting Data Access",
url: `${LEARN_URL}/accessing-data/requesting-data-access`,
},
{
label: "Data Access Controls",
url: `${LEARN_URL}/accessing-data/data-access-controls`,
},
{
label: "Bringing Your Own Data",
url: `${LEARN_URL}/accessing-data/bringing-your-own-data`,
},

{ label: "Running Analysis Workflows", url: "" },
{
label: "Using Example Workspaces",
url: `${LEARN_URL}/analysis-workflows/using-example-workspaces`,
},
{
label: "Running GATK in Terra",
url: `${LEARN_URL}/analysis-workflows/running-gatk`,
},
{
label: "Running Galaxy Workflows from Dockstore",
url: `${LEARN_URL}/analysis-workflows/running-galaxy-workflows-from-dockstore`,
},
{ label: "Running Interactive Analyses", url: "" },
{
label: "Running Jupyter Notebooks in AnVIL",
url: `${LEARN_URL}/interactive-analysis/getting-started-with-jupyter-notebooks`,
},
{
label: "Running R / Bioconductor in AnVILL",
url: `${LEARN_URL}/interactive-analysis/getting-started-with-bioconductor`,
},
{
label: "Running Galaxy in AnVIL",
url: `${LEARN_URL}/interactive-analysis/getting-started-with-galaxy`,
},
{ label: "MOOC", url: "" },
{
label: "What is AnVIL?",
url: `${LEARN_URL}/anvil-mooc/what-is-anvil`,
},
{
label: "Cloud Computing",
url: `${LEARN_URL}/anvil-mooc/cloud-computing`,
},
{
label: "Cloud Costs",
url: `${LEARN_URL}/anvil-mooc/cloud-costs`,
},
{
label: "Use Case: GATK",
url: `${LEARN_URL}/anvil-mooc/use-case-gatk`,
},
{
label: "Use Case: GWAS",
url: `${LEARN_URL}/anvil-mooc/use-case-gwas`,
},
{
label: "Use Case: eQTL",
url: `${LEARN_URL}/anvil-mooc/use-case-eqtl`,
},
{ label: "Video Gallery", url: "" },
{
label: "Anvil",
url: `${LEARN_URL}/videos/anvil-videos`,
},
{
label: "Terra",
url: `${LEARN_URL}/videos/terra-videos`,
},
{
label: "Dockstore",
url: `${LEARN_URL}/videos/dockstore-videos`,
},
{
label: "Galaxy",
url: `${LEARN_URL}/videos/galaxy-videos`,
},
{
label: "Seqr",
url: `${LEARN_URL}/videos/seqr-videos`,
},
{
label: "Workshop Archive",
url: "",
},
{
label: "Workshop Archive",
url: `${LEARN_URL}/workshop-archive`,
},
{
label: "Reference",
url: "",
},
{
label: "GTEx v8 - Free Egress Instructions",
url: `${LEARN_URL}/reference/gtex-v8-free-egress-instructions`,
},
{
label: "Cross Platform Data Access with GA4GH DRS in Terra",
url: `${LEARN_URL}/reference/cross-platform-data-access-with-drs-uris-in-terra`,
},
],
url: LEARN_URL,
},
{
label: "Data Analysts",
menuItems: [
{
label: "Guides and Tutorials",
url: `${LEARN_URL}/data-analysts`,
},
{ label: "Bioconductor / RStudio", url: "" },
{
label: "Starting RStudio",
url: `${LEARN_URL}/data-analysts/rstudio-gsg-video`,
},
{
label: "Using R / Bioconductor in AnVIL",
url: `${LEARN_URL}/data-analysts/using-r-bioconductor-in-anvil`,
},
{
label: "The R / Bioconductor AnVIL Package",
url: `${LEARN_URL}/data-analysts/the-r-bioconductor-anvil-package`,
},
{
label: "Running a Workflow",
url: `${LEARN_URL}/data-analysts/running-a-workflow`,
},
{
label:
"Single-cell RNASeq with 'Orchestrating Single Cell Analysis'\u00A0in R / Bioconductor",
url: `${LEARN_URL}/data-analysts/single-cell-rnaseq-with-orchestrating-single-cell-analysis-in-r-bioconductor`,
},
{
label: "Using AnVIL for teaching R / Bioconductor",
url: `${LEARN_URL}/data-analysts/using-anvil-for-teaching-r-bioconductor`,
},
{
label: "Reproducible Research with AnVILPublish",
url: `${LEARN_URL}/data-analysts/reproducible-research-with-anvilpublish`,
},
{
label: "Participant Stories",
url: `${LEARN_URL}/data-analysts/participant-stories`,
},
{ label: "Galaxy", url: "" },
{
label: "Starting Galaxy",
url: `${LEARN_URL}/data-analysts/galaxy-gsg-video`,
},
{ label: "Jupyter", url: "" },
{
label: "Starting Jupyter",
url: `${LEARN_URL}/data-analysts/jupyter-gsg-video`,
},
],
url: `${LEARN_URL}/data-analysts`,
},
{
label: "Investigators",
menuItems: [
{
label: "Investigators Tutorial Overview",
url: `${LEARN_URL}/investigators`,
},
{
label: "Setting up Your Lab in AnVIL",
url: `${LEARN_URL}/investigators/setting-up-lab-accounts`,
},
{
label: "Preparing a Cloud Cost Budget Justification",
url: `${LEARN_URL}/investigators/budget-templates`,
},
],
url: `${LEARN_URL}/investigators`,
},
{
label: "Data Submitters",
menuItems: [
{ label: "Data Submission Guide", url: "" },
{
label: "Submission Process Overview",
url: `${LEARN_URL}/data-submitters/submission-guide/data-submitters-overview`,
},
{
label: "1 - Register Study/Obtain Approvals",
url: `${LEARN_URL}/data-submitters/submission-guide/data-approval-process`,
},
{
label: "2 - Set Up a Data Model",
url: `${LEARN_URL}/data-submitters/submission-guide/set-up-a-data-model`,
},
{
label: "3 - Prepare for Submission",
url: `${LEARN_URL}/data-submitters/submission-guide/prepare-for-submission`,
},
{
label: "4 - Ingest Data",
url: `${LEARN_URL}/data-submitters/submission-guide/ingesting-data`,
},
{
label: "5 - QC Data",
url: `${LEARN_URL}/data-submitters/submission-guide/qc-data`,
},
{ label: "Data Submission Resources", url: "" },
{
label: "Consortium Data Access Guidelines",
url: `${LEARN_URL}/data-submitters/resources/consortium-data-access-guidelines`,
},
{
label: "Data Withdrawal Procedures",
url: `${LEARN_URL}/data-submitters/resources/anvil-data-withdrawal-procedures`,
},
],
url: `${LEARN_URL}/data-submitters/submission-guide/data-submitters-overview`,
},
],
url: LEARN_URL,
};
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