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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

Popular repositories Loading

  1. toil toil Public

    A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

    Python 909 241

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 268 47

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 54 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 29 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 26 5

Repositories

Showing 10 of 163 repositories
  • findable-ui Public
    DataBiosphere/findable-ui’s past year of commit activity
    TypeScript 1 Apache-2.0 0 39 2 Updated May 7, 2025
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 8 Apache-2.0 2 697 10 Updated May 7, 2025
  • meta-disco Public
    DataBiosphere/meta-disco’s past year of commit activity
    Dockerfile 1 0 10 0 Updated May 6, 2025
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent’s past year of commit activity
    Java 11 BSD-3-Clause 2 0 5 Updated May 6, 2025
  • DataBiosphere/terra-external-credentials-manager’s past year of commit activity
    Java 5 BSD-3-Clause 0 0 0 Updated May 6, 2025
  • DataBiosphere/terra-scientific-pipelines-service’s past year of commit activity
    Java 1 BSD-3-Clause 0 0 0 Updated May 6, 2025
  • leonardo Public

    Notebook service

    DataBiosphere/leonardo’s past year of commit activity
    Scala 44 BSD-3-Clause 21 1 18 Updated May 6, 2025
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 54 BSD-3-Clause 21 145 11 Updated May 6, 2025
  • terra-docker Public
    DataBiosphere/terra-docker’s past year of commit activity
    Jupyter Notebook 29 BSD-3-Clause 35 21 8 Updated May 6, 2025
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    JavaScript 9 BSD-3-Clause 4 0 5 Updated May 6, 2025

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