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Add links to cell x gene portal. Resolves #1089. #1112

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Merged
merged 1 commit into from
Mar 26, 2020
Merged

Add links to cell x gene portal. Resolves #1089. #1112

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138 changes: 115 additions & 23 deletions spa/src/app/files/releases/2020-march/2020-03-release.json
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Original file line number Diff line number Diff line change
Expand Up @@ -51,9 +51,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-MTAB-7316/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-atlas-adult-retina-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Adult%20Retina%20(Wong)"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Adult%20Retina%20(Wong)"
}
]
}
Expand Down Expand Up @@ -109,9 +113,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-GEOD-93593/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-diff-fetal-neuron-ss2.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Interneuron%20Development"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Interneuron%20Development"
}
]
}
Expand Down Expand Up @@ -167,9 +175,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-10/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-spatiotemporal-fetal-kidney-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Kidney%20Single%20Cell%20Atlas"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Kidney%20Single%20Cell%20Atlas"
}
]
},
Expand Down Expand Up @@ -219,9 +231,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-10/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-spatiotemporal-adult-kidney-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Kidney%20Single%20Cell%20Atlas"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Kidney%20Single%20Cell%20Atlas"
}
]
}
Expand Down Expand Up @@ -277,9 +293,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-11/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-ibd-adult-colon-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Colonic%20Mesenchyme%20IBD"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Colonic%20Mesenchyme%20IBD"
}
]
}
Expand Down Expand Up @@ -335,9 +355,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-13/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-reprogram-embryo-dendritic-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Reprogram-Embryo-Dendritic"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Reprogram-Embryo-Dendritic"
}
]
}
Expand Down Expand Up @@ -393,9 +417,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-9/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-landscape-adult-liver-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Single%20Cell%20Liver%20Landscape"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Single%20Cell%20Liver%20Landscape"
}
]
}
Expand Down Expand Up @@ -451,9 +479,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-6/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-profiling-adult-bonemarrow-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Hematopoietic%20Profiling"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Hematopoietic%20Profiling"
}
]
}
Expand Down Expand Up @@ -509,9 +541,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-GEOD-81547/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-somatic-adult-pancreas-ss2.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Pancreas"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Pancreas"
}
]
}
Expand Down Expand Up @@ -567,9 +603,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-1/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-sensitivity-adult-spleen-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Tissue%20Stability"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Tissue%20Stability"
}
]
},
Expand Down Expand Up @@ -619,9 +659,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-1/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-sensitivity-adult-esophagus-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Tissue%20Stability"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Tissue%20Stability"
}
]
},
Expand Down Expand Up @@ -671,9 +715,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-1/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-sensitivity-adult-lung-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Tissue%20Stability"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Tissue%20Stability"
}
]
}
Expand Down Expand Up @@ -729,9 +777,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-4/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-census-adult-blood-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Census%20of%20Immune%20Cells%20Cord%20Blood"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Census%20of%20Immune%20Cells%20Cord%20Blood"
}
]
},
Expand Down Expand Up @@ -781,9 +833,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-4/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-census-adult-immune-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Census%20of%20Immune%20Cells%20Bone%20Marrow"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Census%20of%20Immune%20Cells%20Bone%20Marrow"
}
]
}
Expand Down Expand Up @@ -839,9 +895,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-MTAB-6701/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-fetalmaternal-adult-blood-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%2010x"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%2010x"
}
]
},
Expand Down Expand Up @@ -891,9 +951,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-MTAB-6678/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-fetalmaternal-adult-blood-ss2.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%20Smart-seq2"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%20Smart-seq2"
}
]
},
Expand Down Expand Up @@ -943,9 +1007,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-MTAB-6701/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-fetalmaternal-fetal-placenta-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%2010x"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%2010x"
}
]
},
Expand Down Expand Up @@ -995,9 +1063,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-MTAB-6701/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-fetalmaternal-adult-decidua-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%2010x"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%2010x"
}
]
},
Expand Down Expand Up @@ -1047,9 +1119,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-MTAB-6678/results/tsne"
},
{
"title": "CellxGene",
"url": "http://2020-mar-fetalmaternal-adult-decidua-ss2.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%20Smart-seq2"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Fetal%20Maternal%20Interface%20Smart-seq2"
}
]
}
Expand Down Expand Up @@ -1105,9 +1181,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-8/results"
},
{
"title": "CellxGene",
"url": "http://2020-mar-tcell-adult-lymphnode-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Tissue%20T%20cell%20Activation"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Tissue%20T%20cell%20Activation"
}
]
},
Expand Down Expand Up @@ -1157,9 +1237,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-8/results"
},
{
"title": "CellxGene",
"url": "http://2020-mar-tcell-adult-bonemarrow-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Tissue%20T%20cell%20Activation"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Tissue%20T%20cell%20Activation"
}
]
},
Expand Down Expand Up @@ -1209,9 +1293,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-8/results"
},
{
"title": "CellxGene",
"url": "http://2020-mar-tcell-adult-lung-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Tissue%20T%20cell%20Activation"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Tissue%20T%20cell%20Activation"
}
]
},
Expand Down Expand Up @@ -1261,9 +1349,13 @@
"title": "SCEA",
"url": "https://www.ebi.ac.uk/gxa/sc/experiments/E-HCAD-8/results"
},
{
"title": "CellxGene",
"url": "http://2020-mar-tcell-adult-blood-10x.cellxgene.dev.explore.data.humancellatlas.org/"
},
{
"title": "Xena",
"url" : "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Tissue%20T%20cell%20Activation"
"url": "https://singlecell.xenabrowser.net/datapages/?cohort=HCA%20Human%20Tissue%20T%20cell%20Activation"
}
]
}
Expand Down
4 changes: 2 additions & 2 deletions spa/src/app/files/releases/release-table/release-table.component.html
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Expand Up @@ -59,10 +59,10 @@ <h2 class="fontsize-xl">{{organView.organ}}</h2>
</mat-cell>
</ng-container>
<ng-container matColumnDef="visualize">
<mat-header-cell *matHeaderCellDef class="fontsize-xxs bold">
<mat-header-cell *matHeaderCellDef class="fontsize-xxs bold visualize">
<span>Visualizations</span>
</mat-header-cell>
<mat-cell *matCellDef="let element" class="fontsize-xxs dot">
<mat-cell *matCellDef="let element" class="fontsize-xxs dot visualize">
<ng-container *ngFor="let visualization of element.visualizations">
<hca-tooltip [tooltipClass]="'hca-tooltip'"
[tooltipContent]="visualization.description"
Expand Down
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