🙌 I am Cunliang Geng

I am a research software engineer at the Netherlands eScience Center with a background in computational structural biology.

I am passionate about scientific software development and the application of AI in life sciences to tackle complex challenges.

Projects

⭐ AI for Biology

Protein-protein interaction prediction

• DeepRank: a deep learning framework for identifying 3D protein-protein interactions
• iScore: an MPI supported software for ranking protein-protein docking models based on random walk graph kernel and support vector machines

Binding affinity prediction

• PRODIGY-LIG: a webserver for large-scale prediction of binding affinity (∆G) in protein-ligand complexes
• iSEE: a random forest model for prediction of binding affinity changes upon single point mutations (∆∆G) in protein-protein complexes

DNA barcode identification

• TaxoTagger: a python library powered by deep learning and semantic search for DNA barcode identification

⭐ Omics Data Processing

• NPLinker: a python framework for integrating multi-omics data to discover new microbial natural products
• MatchMS: a python library for processing mass spectrometry data and computing similarity scores between mass spectra
• pdb2sql: a python library for parsing, manipulation and analysis of PDB files using SQL queries

⭐ Federated Learning

• Vantage6: an infrastructure for federated analysis and learning, powered by kubernetes and docker.

⭐ Healthcare Data Processing

• FHIR for GameBus: a data harmonization microservice to transform healthcare data into the standard FHIR format.