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40 followers · 37 following

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@NLeSC @DeepRank @matchms @vantage6 @nwo-strap @NPLinker @MyDigiTwinNL

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CunliangGeng/README.md

🙌 I am Cunliang Geng

I am a research software engineer at the Netherlands eScience Center with a background in computational structural biology.

I am passionate about scientific software development and the application of AI in life sciences to tackle complex challenges.

Projects

⭐ AI for Biology

Protein-protein interaction prediction

  • DeepRank: a deep learning framework for identifying 3D protein-protein interactions
  • iScore: an MPI supported software for ranking protein-protein docking models based on random walk graph kernel and support vector machines

Binding affinity prediction

  • PRODIGY-LIG: a webserver for large-scale prediction of binding affinity (∆G) in protein-ligand complexes
  • iSEE: a random forest model for prediction of binding affinity changes upon single point mutations (∆∆G) in protein-protein complexes

DNA barcode identification

  • TaxoTagger: a python library powered by deep learning and semantic search for DNA barcode identification

⭐ Omics Data Processing

  • NPLinker: a python framework for integrating multi-omics data to discover new microbial natural products
  • MatchMS: a python library for processing mass spectrometry data and computing similarity scores between mass spectra
  • pdb2sql: a python library for parsing, manipulation and analysis of PDB files using SQL queries

⭐ Federated Learning

  • Vantage6: an infrastructure for federated analysis and learning, powered by kubernetes and docker.

⭐ Healthcare Data Processing

  • FHIR for GameBus: a data harmonization microservice to transform healthcare data into the standard FHIR format.

Pinned Loading

  1. vantage6/vantage6 vantage6/vantage6 Public

    The main vantage6 repository: code for the central server, nodes, CLI and Python Client

    Python 36 13

  2. MycoAI/taxotagger MycoAI/taxotagger Public

    DNA taxonomy identification, powered by deep learning and semantic search

    Python 2

  3. DeepRank/deeprank DeepRank/deeprank Public archive

    This repository has been integrated in https://github.com/DeepRank/deeprank2

    Python 146 25

  4. DeepRank/iScore DeepRank/iScore Public

    iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines

    Python 31 10

  5. NPLinker/nplinker NPLinker/nplinker Public

    A python framework for microbial natural products data mining by integrating genomics and metabolomics data

    Python 20 13

  6. matchms/matchms matchms/matchms Public

    Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

    Python 221 74