change the . to - in species ID, in multifasta and metadata #171
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Description
Those dots mess up EVERYTHING. I changed them to hyphens in the multifasta but it's making me feel like getBaseName() should be replaced at some point.
EDIT: I also deleted some extra sample stuff so check that and make sure it's ok.
Checklist
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Have you run appropriate tests (unit/integration/end-to-end) to check logic across run environments (Conda/Docker/Singularity on Scicomp/AWS/NF Tower/Local)?
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